Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1461
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,570...    28   3.4  
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779...    27   6.0  
05_04_0119 - 18169729-18169887,18170515-18170653,18170728-181709...    27   7.9  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    27   7.9  

>11_01_0692 -
           5700394-5700474,5700546-5702675,5705033-5706169,
           5709679-5709975
          Length = 1214

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
 Frame = +1

Query: 136 LSRLCNFTW*RCNLQDLFEGTRRNPLRCV*GASQMHHKSFTKLV*SFSLAGKYKLAIL-- 309
           L+RL N ++  C++ + FE     P   +      HH   TK    F++  K K   L  
Sbjct: 71  LNRLKNASYDICDMLEEFEAKTATPAARMLSRKLFHHPKITK----FTMVHKMKELRLEL 126

Query: 310 --VSRPVRNIICVRNKIDNNMHCSKYRNFETKKYE-FFINRTKTK 435
             ++    N    +    +  H    R    K+YE F + RT+ K
Sbjct: 127 KDITDQYHNFGFKQGSTFSEQHVPDKRETSPKEYEAFIVGRTEQK 171


>07_01_0010 +
           72162-74303,74470-74545,75971-76043,76496-76540,
           77916-78116,78463-78541,78637-78678,78788-78847,
           79087-80484,80777-80902,81037-81300
          Length = 1501

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 296 SLQYLYHDLFEI*FVYGIKLIIICTVVNIEILKLKNMNFL 415
           +  Y YH+ +++ F  GIK I+   VV   +L+L +++ +
Sbjct: 868 TFMYKYHEDWQLQFAAGIKTILFVPVVPHGVLQLGSLDLV 907


>05_04_0119 -
           18169729-18169887,18170515-18170653,18170728-18170974,
           18171585-18171968,18172251-18172540,18172884-18173295,
           18173409-18173420,18173943-18174135
          Length = 611

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +2

Query: 20  YGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAGKSACCP 142
           YG  VC   Y E  PC     +       R+RH    + CP
Sbjct: 91  YGVDVCPLKYNEYIPCHDASYISQLKKLDRSRHEDLESICP 131


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 23/73 (31%), Positives = 30/73 (41%)
 Frame = +2

Query: 62  PCIQPPLVCPKNTEHRARHAGKSACCPACVTLLGEGATCKIYSKELGETPSAVCKEPLKC 241
           PC Q  L C +  + R R+ G+ AC   C    G+ A C             VC + L+C
Sbjct: 405 PCYQE-LTCERKCQ-RLRNCGRHACRRRCCE--GDCAPCP-----------EVCDKRLRC 449

Query: 242 ITRVSLSLCSRFH 280
                LS C R H
Sbjct: 450 GNHKCLSPCHRCH 462


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,922,363
Number of Sequences: 37544
Number of extensions: 251844
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)