Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1461
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-6|AAD14755.2|  589|Caenorhabditis elegans Acid sphingom...    30   0.76 
Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z68296-6|CAE17754.1|  195|Caenorhabditis elegans Hypothetical pr...    28   3.1  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    27   5.3  
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF040645-1|AAB94973.1|  377|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z81544-9|CAI79252.1|  231|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    27   7.0  
U80840-9|AAB37924.1|  289|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       27   9.3  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       27   9.3  
U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AF125964-6|AAD14755.2|  589|Caenorhabditis elegans Acid
           sphingomyelinase protein 3 protein.
          Length = 589

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +2

Query: 224 KEPLKCITRVSLSLCSRFH*QENISLQYLYHDLFEI*FVYGIKLIII 364
           K+  +C+  +++ +C  FH ++N    ++  D F   F+Y IK I++
Sbjct: 38  KKTEECVMEIAVFICETFHIEDNDVCNFIISD-FSDEFMYVIKQILV 83


>Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical
           protein Y41E3.18 protein.
          Length = 510

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 92  KNTEHRARHAGKSACCPACVTLLGEGA 172
           K T HR +H    ACCP C  ++   A
Sbjct: 147 KGTWHRVKHVVFVACCPPCCCIIQRSA 173


>Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK1058.6 protein.
          Length = 305

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 146 CVTLLGEGATCKIYSKELGETPSAVCKEPLKCITRVSL 259
           CV   G+G+T  ++S  +G+  SA+C E    + R++L
Sbjct: 137 CVWGQGDGSTMPVFSTSVGKIGSAICWENYMPLYRMTL 174


>Z68296-6|CAE17754.1|  195|Caenorhabditis elegans Hypothetical
           protein C46C2.6a protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +2

Query: 86  CPKNTEHRARHAGKSACCPACVTLLGEGATC-KIYSKELGETPSAVCK-EPLKC 241
           CP + +   +H+G+ A   AC+     G  C K++S ++  T    CK +P+ C
Sbjct: 60  CPSDYDFIRQHSGRCADGTACIPDSSFGEPCIKLFSYQM--TKKFCCKSDPIDC 111


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
           protein F48E3.8a protein.
          Length = 2427

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +2

Query: 5   VASAAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAGKSACCPACVTLLGEGATCKI 184
           V     GAL  GT     +  IQ  + CP    +  R AG       C+T+   G  C+ 
Sbjct: 58  VCQCVKGALNTGTTCIASSTAIQTSVACPAGQTY-IREAG------VCMTVQQPGEPCQ- 109

Query: 185 YSKELGE-TPSAVC-KEPLKCI 244
           YS++     P A C K   +C+
Sbjct: 110 YSQQCSALEPGAYCLKMRCECV 131


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
           protein F48E3.8b protein.
          Length = 1299

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +2

Query: 5   VASAAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAGKSACCPACVTLLGEGATCKI 184
           V     GAL  GT     +  IQ  + CP    +  R AG       C+T+   G  C+ 
Sbjct: 58  VCQCVKGALNTGTTCIASSTAIQTSVACPAGQTY-IREAG------VCMTVQQPGEPCQ- 109

Query: 185 YSKELGE-TPSAVC-KEPLKCI 244
           YS++     P A C K   +C+
Sbjct: 110 YSQQCSALEPGAYCLKMRCECV 131


>AF040645-1|AAB94973.1|  377|Caenorhabditis elegans Hypothetical
           protein F52C6.5 protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 361 NMHCSKYRNFETKKYEF 411
           N+HC K   FETKK+ F
Sbjct: 50  NLHCEKEECFETKKWTF 66


>Z81544-9|CAI79252.1|  231|Caenorhabditis elegans Hypothetical
           protein F49C5.10 protein.
          Length = 231

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 47  YCEKNPCIQPPLVCPKNTEHRARHAGKSAC 136
           Y   N    PPL+C + T ++ R+   +AC
Sbjct: 38  YFNFNKIWNPPLICNRGTNYKCRNRDCTAC 67


>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 2   CVASAAYGALVCGTDYCEKNPCI 70
           C  +A +G   C    CE NPC+
Sbjct: 623 CFCAAGFGGPKCDQRPCESNPCL 645


>U80840-9|AAB37924.1|  289|Caenorhabditis elegans Hypothetical
           protein F08D12.3a protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 23  GALVCGTDYCEKNPCIQP-PLVCPKNTEHRARHAGKSACCPACVTLLGEGATC 178
           G +V G+D CE      P    C KN +     A     CPA  T L +G+ C
Sbjct: 232 GQVVVGSDCCEAKDVYDPSTATCQKNED--VGPAAVDGACPA-GTSLTKGSVC 281


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
 Frame = +2

Query: 62  PCIQPPLVCPKNTEHRARHAGKSACCPACVTL----------LGEGATCKIYSKELGETP 211
           PC++P   C  +  H+  H  ++  CP C  L          + +   C I S   G   
Sbjct: 642 PCVRPHS-CDHSVSHKC-HGEQN--CPPCTQLTEKMCYGGHRVRKNIPCHIDSVSCG--- 694

Query: 212 SAVCKEPLKCITRVSLSLC 268
             VCK+PLKC   V    C
Sbjct: 695 -VVCKKPLKCGVHVCQRTC 712


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 2   CVASAAYGALVCGTDYCEKNPCI 70
           C  +A +G   C    CE NPC+
Sbjct: 623 CFCAAGFGRPKCDQRPCESNPCL 645


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 2   CVASAAYGALVCGTDYCEKNPCI 70
           C  +A +G   C    CE NPC+
Sbjct: 623 CFCAAGFGRPKCDQRPCESNPCL 645


>U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical
           protein T22F7.5 protein.
          Length = 462

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = +2

Query: 86  CPKNTEHRARHAGKSACCPACV-----TLLGEGATCKIYSKELGETPSAVCKEP 232
           CP+    +    GK+ CC A +      ++GEG++    +    ETP A    P
Sbjct: 93  CPEGYSCQNSKGGKTICCTARIGGRDRPMIGEGSSNITIAPGAPETPGATVPPP 146


>AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical
           protein Y5H2A.4 protein.
          Length = 558

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +2

Query: 50  CEKNPCIQPPLVCPKNTEHRARHAGKSACCPAC 148
           C+    +Q    C +  +H++     S C PAC
Sbjct: 76  CQNTAPVQASCSCAQPVQHQSYQVQTSQCAPAC 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,470,516
Number of Sequences: 27780
Number of extensions: 233207
Number of successful extensions: 678
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)