Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1461
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.74 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   1.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   6.9  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 284 QENISLQYLYHDL-FEI*FVYGIKLIIICTVVNIEILKL 397
           ++N+ +   Y D  + I F Y I LI++CTV  +   K+
Sbjct: 802 EDNLLVCNSYVDASYMIAFAYPIMLIVVCTVYAVLTRKI 840


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 107 RARHAGKSACCPACVTLLGEGAT 175
           + RH   S CC  C  L G G++
Sbjct: 3   KGRHVVMSCCCWCCDNLGGPGSS 25


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 170 HLHQVKLHKRDSKHSFQRVWRDAQ 99
           ++ +VK  K  SKH  Q  W D +
Sbjct: 325 YIPKVKNKKAGSKHLLQNTWLDPE 348


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 310 VSRPVRNIICVRNKIDNNMHCSKYRNFETKK 402
           V   +RN  CV N  ++N+  +  +N   +K
Sbjct: 405 VKELIRNTHCVNNNQNDNIQNTNNQNDNNQK 435


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,931
Number of Sequences: 438
Number of extensions: 2731
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)