Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1456
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    27   2.6  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    27   3.4  
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...    26   4.5  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   4.5  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   6.0  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   6.0  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   7.9  

>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 580 SFPVTV--SNSERYGGSSALADNDEIPCGSRSLRETWSRGPVSVET 449
           S+P+ +  +      GSS+L +  E  C    L E W   P ++++
Sbjct: 456 SYPMNIGLTGKGNDSGSSSLKEQIEAGCSGLKLHEDWGSTPAAIDS 501


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 326 PILRCKVAAFQFGWSSRYSCMSFHL 252
           P+LR K+AA   GW S  +C SF +
Sbjct: 60  PLLRTKLAAIHEGWES--ACHSFEI 82


>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 287 SRTGMPPPYILVWARCGTRCYFLPTKDPQAV 379
           S TG+P P+I+  +R   R YF  T+  +++
Sbjct: 2   SNTGLPKPWIVKISRSRNRPYFFNTETHESL 32


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -2

Query: 505 CGSRSLRETW-SRGPVSVET*GGVQCAGSQLY 413
           C    L+  W S  P   ET GG+ C G +LY
Sbjct: 213 CSPGMLKTQWPSTQPSDGETRGGLLCKGGKLY 244


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 673 LFSENSF*AIGPSFGLCFDHLNQV*KPSPRASFPV-TVSNS 554
           L+   SF   GP F  C  H N+  K +P A+FP  +++NS
Sbjct: 171 LYGSGSFHHDGP-FDACRPHRNRNSKKAPVAAFPKDSIANS 210


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 28   SFINRSCWRPINAQNKTGKFPEKQ*NMSDFTGRSVFRNR*SDREAMEDLLHVEHEV 195
            S++ R C   INA+ +TG +      MS  T    +RN   DR A E  L +E  +
Sbjct: 971  SWLYRGCVITINAEYETGDYQMILRRMSGTTIYRFWRNM-RDRGAFEKSLMMEQSM 1025


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 377 LPAGPWSAKSSISCRTLPILRC 312
           L  G W   ++ISC   P+L C
Sbjct: 128 LSKGSWEVTNTISCEKTPLLFC 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,153,405
Number of Sequences: 5004
Number of extensions: 71610
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)