Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1448
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...   111   9e-26
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    29   0.85 
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.6  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   3.4  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   7.9  

>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score =  111 bits (267), Expect = 9e-26
 Identities = 45/92 (48%), Positives = 64/92 (69%)
 Frame = +1

Query: 274 ISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMXIACEIIDKALKDDFGFQSILWVFSG 453
           + +ELVFDID+TDYD++RTCC +  +CEKCW F+ IA +++D    +DFGF+ ILWV+SG
Sbjct: 124 LKKELVFDIDMTDYDDVRTCCSKTNICEKCWPFITIAVQVLDICFHEDFGFKHILWVYSG 183

Query: 454 RRGIHCWVSRL*SQNSR*SGRGAIXDYLCLIV 549
           RRGIH W+    + +     R  I  YL ++V
Sbjct: 184 RRGIHAWICDEIACSLDDRSRRMIASYLQVVV 215



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +2

Query: 14  SDMLPTYYARQFPQNIFCRWLACGSS-PQPLCNRELSFTLADDVYLRYLSISHQKDLQTL 190
           S+ +  YY   FP     +WL  G        +RE +FTL +D Y+RYLS S+ ++L+  
Sbjct: 32  SETMIQYYRHLFPWKYLFQWLNHGPVVTNDFAHREFAFTLPNDAYIRYLSFSNWEELKKE 91

Query: 191 LQKKCPHKLDVGAVYNTKP 247
               CP + +VG VY+  P
Sbjct: 92  ALNLCPSRFEVGPVYSANP 110


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 349 VCEKCWKFMXIACEIIDKALKDDFGFQSILWVFSG 453
           +C  C K   I   ++   L +  GF ++LW+F G
Sbjct: 497 ICAACGKAGAILSALLFNKLTEVIGFGNVLWIFFG 531


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 556 HHXRLNKGNRQ*LLDLTIESSGFIILIPNSEYHADLKI 443
           H   + K +R+ +LD+ +ES    +L+ N  Y A +++
Sbjct: 571 HLQNIGKLHREHILDMAVESERQKLLLTNKRYKAQIEL 608


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -3

Query: 426 EPEVIF*SFINDFTCNXHKFPAFFTH 349
           +P+V + + ++DF+C+ + FP   +H
Sbjct: 563 DPKVEYKAILHDFSCHTYDFPESLSH 588


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 74  LACGSSPQPLCNRELSFTLADDV--YLRYLSI-SHQKDLQTLLQKKCPHKLDVGAVYNT 241
           LA  S   PL   EL   L+  V  Y + L + +++  L  +L+KK  + +    +Y T
Sbjct: 712 LAALSDASPLVRHELVIFLSHFVVNYKKQLMVVAYESSLADILEKKNHNSISASTIYET 770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,522
Number of Sequences: 5004
Number of extensions: 55726
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)