Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1448
(698 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X74330-1|CAA52377.1| 420|Homo sapiens DNA primase (subunit p48)... 129 8e-30
BC005266-1|AAH05266.1| 420|Homo sapiens primase, polypeptide 1,... 129 8e-30
AK223391-1|BAD97111.1| 420|Homo sapiens DNA primase small subun... 129 8e-30
U89689-1|AAC51726.1| 50|Homo sapiens DNA primase 1 protein. 68 3e-11
BC126435-1|AAI26436.1| 248|Homo sapiens apolipoprotein L domain... 31 5.2
BC126433-1|AAI26434.1| 248|Homo sapiens apolipoprotein L domain... 31 5.2
BC042478-1|AAH42478.1| 302|Homo sapiens APOLD1 protein protein. 31 5.2
AK057867-1|BAB71601.1| 248|Homo sapiens protein ( Homo sapiens ... 31 5.2
>X74330-1|CAA52377.1| 420|Homo sapiens DNA primase (subunit p48)
protein.
Length = 420
Score = 129 bits (312), Expect = 8e-30
Identities = 57/110 (51%), Positives = 76/110 (69%)
Frame = +1
Query: 280 RELVFDIDLTDYDEIRTCCQEARVCEKCWKFMXIACEIIDKALKDDFGFQSILWVFSGRR 459
+ELVFDID+TDYD++R CC A +C KCW M +A IID+ALK+DFGF+ LWV+SGRR
Sbjct: 104 KELVFDIDMTDYDDVRRCCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRR 163
Query: 460 GIHCWVSRL*SQNSR*SGRGAIXDYLCLIVXGENHSKKVHLGNENLHSSI 609
G+HCWV + + R I +YL L+ G++ KKVHL +E +H I
Sbjct: 164 GVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHL-SEKIHPFI 212
Score = 77.8 bits (183), Expect = 3e-14
Identities = 36/81 (44%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Frame = +2
Query: 11 LSDMLPTYYARQFPQNIFCRWLACGSSPQPLC-NRELSFTLADDVYLRYLSISHQKDLQT 187
L ++L YY R FP + + RWL G + +RE SFTL DD+Y+RY S ++Q DL+
Sbjct: 9 LPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEK 68
Query: 188 LLQKKCPHKLDVGAVYNTKPS 250
+QK P+K+D+GAVY+ +P+
Sbjct: 69 EMQKMNPYKIDIGAVYSHRPN 89
>BC005266-1|AAH05266.1| 420|Homo sapiens primase, polypeptide 1,
49kDa protein.
Length = 420
Score = 129 bits (312), Expect = 8e-30
Identities = 57/110 (51%), Positives = 76/110 (69%)
Frame = +1
Query: 280 RELVFDIDLTDYDEIRTCCQEARVCEKCWKFMXIACEIIDKALKDDFGFQSILWVFSGRR 459
+ELVFDID+TDYD++R CC A +C KCW M +A IID+ALK+DFGF+ LWV+SGRR
Sbjct: 104 KELVFDIDMTDYDDVRRCCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRR 163
Query: 460 GIHCWVSRL*SQNSR*SGRGAIXDYLCLIVXGENHSKKVHLGNENLHSSI 609
G+HCWV + + R I +YL L+ G++ KKVHL +E +H I
Sbjct: 164 GVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHL-SEKIHPFI 212
Score = 77.8 bits (183), Expect = 3e-14
Identities = 36/81 (44%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Frame = +2
Query: 11 LSDMLPTYYARQFPQNIFCRWLACGSSPQPLC-NRELSFTLADDVYLRYLSISHQKDLQT 187
L ++L YY R FP + + RWL G + +RE SFTL DD+Y+RY S ++Q DL+
Sbjct: 9 LPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEK 68
Query: 188 LLQKKCPHKLDVGAVYNTKPS 250
+QK P+K+D+GAVY+ +P+
Sbjct: 69 EMQKMNPYKIDIGAVYSHRPN 89
>AK223391-1|BAD97111.1| 420|Homo sapiens DNA primase small subunit,
49kDa variant protein.
Length = 420
Score = 129 bits (312), Expect = 8e-30
Identities = 57/110 (51%), Positives = 76/110 (69%)
Frame = +1
Query: 280 RELVFDIDLTDYDEIRTCCQEARVCEKCWKFMXIACEIIDKALKDDFGFQSILWVFSGRR 459
+ELVFDID+TDYD++R CC A +C KCW M +A IID+ALK+DFGF+ LWV+SGRR
Sbjct: 104 KELVFDIDMTDYDDVRRCCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRR 163
Query: 460 GIHCWVSRL*SQNSR*SGRGAIXDYLCLIVXGENHSKKVHLGNENLHSSI 609
G+HCWV + + R I +YL L+ G++ KKVHL +E +H I
Sbjct: 164 GVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHL-SEKIHPFI 212
Score = 77.8 bits (183), Expect = 3e-14
Identities = 36/81 (44%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Frame = +2
Query: 11 LSDMLPTYYARQFPQNIFCRWLACGSSPQPLC-NRELSFTLADDVYLRYLSISHQKDLQT 187
L ++L YY R FP + + RWL G + +RE SFTL DD+Y+RY S ++Q DL+
Sbjct: 9 LPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEK 68
Query: 188 LLQKKCPHKLDVGAVYNTKPS 250
+QK P+K+D+GAVY+ +P+
Sbjct: 69 EMQKMNPYKIDIGAVYSHRPN 89
>U89689-1|AAC51726.1| 50|Homo sapiens DNA primase 1 protein.
Length = 50
Score = 68.1 bits (159), Expect = 3e-11
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = +1
Query: 280 RELVFDIDLTDYDEIRTCCQEARVCEKCWKFMXIACEIIDKAL 408
+ELVFDID+TDYD++R CC A +C KCW M +A IID+AL
Sbjct: 8 KELVFDIDMTDYDDVRRCCSSADICPKCWTLMTMAIRIIDRAL 50
>BC126435-1|AAI26436.1| 248|Homo sapiens apolipoprotein L domain
containing 1 protein.
Length = 248
Score = 30.7 bits (66), Expect = 5.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 62 FCRWLACGSSPQPLCNRELSFTLADDVY 145
FCRW CG C R S L + VY
Sbjct: 141 FCRWQGCGDRQLLQCGRNASIALYNSVY 168
>BC126433-1|AAI26434.1| 248|Homo sapiens apolipoprotein L domain
containing 1 protein.
Length = 248
Score = 30.7 bits (66), Expect = 5.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 62 FCRWLACGSSPQPLCNRELSFTLADDVY 145
FCRW CG C R S L + VY
Sbjct: 141 FCRWQGCGDRQLLQCGRNASIALYNSVY 168
>BC042478-1|AAH42478.1| 302|Homo sapiens APOLD1 protein protein.
Length = 302
Score = 30.7 bits (66), Expect = 5.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 62 FCRWLACGSSPQPLCNRELSFTLADDVY 145
FCRW CG C R S L + VY
Sbjct: 195 FCRWQGCGDRQLLQCGRNASIALYNSVY 222
>AK057867-1|BAB71601.1| 248|Homo sapiens protein ( Homo sapiens
cDNA FLJ25138 fis, clone CBR07057. ).
Length = 248
Score = 30.7 bits (66), Expect = 5.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 62 FCRWLACGSSPQPLCNRELSFTLADDVY 145
FCRW CG C R S L + VY
Sbjct: 141 FCRWQGCGDRQLLQCGRNASIALYNSVY 168
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,305,634
Number of Sequences: 237096
Number of extensions: 1836210
Number of successful extensions: 3197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3191
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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