Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1448
         (698 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071217-1|AAL48839.1|  438|Drosophila melanogaster RE26079p pro...   130   1e-30
AE014296-1426|AAF50439.1|  438|Drosophila melanogaster CG7108-PA...   130   1e-30
X79801-1|CAA56196.1|  438|Drosophila melanogaster DNA polymerase...   128   9e-30

>AY071217-1|AAL48839.1|  438|Drosophila melanogaster RE26079p
           protein.
          Length = 438

 Score =  130 bits (315), Expect = 1e-30
 Identities = 57/113 (50%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
 Frame = +1

Query: 274 ISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMXIACEIIDKALKDDFGFQSILWVFSG 453
           + RELVFDID+TDYDE+RTCC  A VC KCWKFM +A  ++D AL++DFGF+ I+W+FSG
Sbjct: 120 VQRELVFDIDMTDYDEVRTCCSGAGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSG 179

Query: 454 RRGIHCWVSRL*SQNSR*SGRGAIXDYLCLIVXGE---NHSKKVHLGNENLHS 603
           RRGIHCWV    +++    GR A+ +YL +I        +S +  +G+   HS
Sbjct: 180 RRGIHCWVCDYQARHLDGRGRYAVAEYLNIITYASFAGGNSPRCSMGDRPHHS 232



 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
 Frame = +2

Query: 8   ILSDMLPTYYARQFPQNIFCRWLACGSSPQPL-CNRELSFTLADDVYLRYLSISHQKDLQ 184
           +L DMLP YY R FP   F RWL+ GSS   +  NRE+SFTL DD+Y+RYL    Q +L+
Sbjct: 27  VLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQAELE 86

Query: 185 TLLQKKCPHKLDVGAVYNTKP 247
             +  + P K+D+G V ++KP
Sbjct: 87  KEICSRNPIKIDIGPVMHSKP 107


>AE014296-1426|AAF50439.1|  438|Drosophila melanogaster CG7108-PA
           protein.
          Length = 438

 Score =  130 bits (315), Expect = 1e-30
 Identities = 57/113 (50%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
 Frame = +1

Query: 274 ISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMXIACEIIDKALKDDFGFQSILWVFSG 453
           + RELVFDID+TDYDE+RTCC  A VC KCWKFM +A  ++D AL++DFGF+ I+W+FSG
Sbjct: 120 VQRELVFDIDMTDYDEVRTCCSGAGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSG 179

Query: 454 RRGIHCWVSRL*SQNSR*SGRGAIXDYLCLIVXGE---NHSKKVHLGNENLHS 603
           RRGIHCWV    +++    GR A+ +YL +I        +S +  +G+   HS
Sbjct: 180 RRGIHCWVCDYQARHLDGRGRYAVAEYLNIITYASFAGGNSPRCSMGDRPHHS 232



 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
 Frame = +2

Query: 8   ILSDMLPTYYARQFPQNIFCRWLACGSSPQPL-CNRELSFTLADDVYLRYLSISHQKDLQ 184
           +L DMLP YY R FP   F RWL+ GSS   +  NRE+SFTL DD+Y+RYL    Q +L+
Sbjct: 27  VLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQAELE 86

Query: 185 TLLQKKCPHKLDVGAVYNTKP 247
             +  + P K+D+G V ++KP
Sbjct: 87  KEICSRNPIKIDIGPVMHSKP 107


>X79801-1|CAA56196.1|  438|Drosophila melanogaster DNA polymerase
           subunit A protein.
          Length = 438

 Score =  128 bits (308), Expect = 9e-30
 Identities = 60/120 (50%), Positives = 79/120 (65%), Gaps = 3/120 (2%)
 Frame = +1

Query: 274 ISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMXIACEIIDKALKDDFGFQSILWVFSG 453
           + RELVFDID+TDYDE+RTCC  A VC KCWKFM +A  ++D AL +DFGF+ I+W+FSG
Sbjct: 120 VQRELVFDIDMTDYDEVRTCCSGAGVCLKCWKFMVLAARVLDVALAEDFGFEHIIWIFSG 179

Query: 454 RRGIHCWVSRL*SQNSR*SGRGAIXDYLCLIVXGE---NHSKKVHLGNENLHSSIXACLK 624
           RRGIHCWV    +++    GR A  +YL +I        +S +  +G +  H SI   LK
Sbjct: 180 RRGIHCWVCDYQARHLDGRGRYAEAEYLNIITYASFAGGNSPRCSMG-DRPHHSIKRALK 238



 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
 Frame = +2

Query: 8   ILSDMLPTYYARQFPQNIFCRWLACGSSPQPL-CNRELSFTLADDVYLRYLSISHQKDLQ 184
           +L DMLP YY R FP   F RWL+ GSS   +  NRE+SFTL DD+Y+RYL    Q +L+
Sbjct: 27  VLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQAELE 86

Query: 185 TLLQKKCPHKLDVGAVYNTKP 247
             +  + P K+D+G V ++KP
Sbjct: 87  KEICSRNPIKIDIGPVMHSKP 107


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,652,355
Number of Sequences: 53049
Number of extensions: 570938
Number of successful extensions: 1212
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)