Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1448
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22179-4|CAA80161.1|  410|Caenorhabditis elegans Hypothetical pr...   115   4e-26
AF100306-5|AAC68924.2|  318|Caenorhabditis elegans Hypothetical ...   112   3e-25

>Z22179-4|CAA80161.1|  410|Caenorhabditis elegans Hypothetical
           protein F58A4.4 protein.
          Length = 410

 Score =  115 bits (276), Expect = 4e-26
 Identities = 47/76 (61%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
 Frame = +1

Query: 253 RRH-DAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMXIACEIIDKALKDDFGFQ 429
           +RH D   + RELVFDIDLTDYD +R CC++A VC KCWKFM +A +I+D  L+D F F+
Sbjct: 91  KRHTDYQAVERELVFDIDLTDYDPVRNCCKDATVCPKCWKFMVLAVKILDFQLEDMFDFK 150

Query: 430 SILWVFSGRRGIHCWV 477
           + +WVFSGRRG+HCWV
Sbjct: 151 ARMWVFSGRRGVHCWV 166



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +2

Query: 23  LPTYYARQFPQNIFCRWLACGSSPQPLCNR-ELSFTLADDVYLRYLSISHQKDLQTLLQK 199
           LP YY   FP   F +WL  G +     NR E +F LADDV++RY S + +      L  
Sbjct: 12  LPIYYKNFFPVKPFTKWLRYGQNNGDYFNRREFAFILADDVHIRYRSYNDEHAFFKALSS 71

Query: 200 KCPHKLDVGAVYNTKP 247
             P KLD+GAVYN +P
Sbjct: 72  TNPEKLDIGAVYNHEP 87


>AF100306-5|AAC68924.2|  318|Caenorhabditis elegans Hypothetical
           protein T24C4.5 protein.
          Length = 318

 Score =  112 bits (269), Expect = 3e-25
 Identities = 45/75 (60%), Positives = 57/75 (76%)
 Frame = +1

Query: 253 RRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMXIACEIIDKALKDDFGFQS 432
           R  D   + RELVFDIDLTDYD +R CC++A VC KCWKFM +A  I+D  L++ F F++
Sbjct: 92  RYTDYQAVERELVFDIDLTDYDPVRNCCKDATVCPKCWKFMVLAVRILDFQLEEMFNFKA 151

Query: 433 ILWVFSGRRGIHCWV 477
            +WVFSGRRG+HCWV
Sbjct: 152 RMWVFSGRRGVHCWV 166



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +2

Query: 23  LPTYYARQFPQNIFCRWLACGSSPQPLCNR-ELSFTLADDVYLRYLSISHQKDLQTLLQK 199
           LP YY   FP   F +WL  G +     NR E +F LADDV++RY S + +      L  
Sbjct: 12  LPIYYKNFFPVKPFTKWLCYGQNYGDYFNRREFTFILADDVHIRYRSYNDEHSFVKALSS 71

Query: 200 KCPHKLDVGAVYNTKP 247
             P KLD+GAVYN +P
Sbjct: 72  TNPEKLDIGAVYNHEP 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,039,060
Number of Sequences: 27780
Number of extensions: 309104
Number of successful extensions: 723
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)