Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1434
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.34 
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    28   0.78 
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    27   1.4  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    26   4.2  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    26   4.2  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    25   5.5  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   5.5  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    25   9.6  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 72  WPKLKKNLINITFEHYLPTSNPSAQFPPRTFACATTKNHYRLDLRTLGLKMVVRT 236
           WPKL+KN+  IT  +   T   S  F P       ++ H +LDLR   +   VR+
Sbjct: 746 WPKLRKNIRKITKPNGFTTDQHSQTFIP-------SQTHTKLDLRLSDVTDSVRS 793


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 171  ATTKNHYRLDLRTLGLKMV--VRTPKGLLPTFVCQGWYRIVYRP 296
            A T N Y  +   + LK+   + T +GLL ++    W R VY P
Sbjct: 1289 ANTVNQYPSEWEKIDLKVFDDLETTEGLLSSYCSNEWNREVYHP 1332


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/51 (27%), Positives = 20/51 (39%)
 Frame = +3

Query: 102 ITFEHYLPTSNPSAQFPPRTFACATTKNHYRLDLRTLGLKMVVRTPKGLLP 254
           +  + Y P +N     PP   +     N     LRT  L M + TP   +P
Sbjct: 441 LRLDEYPPDANRGYNLPPAIISVFDENNTKLCSLRTAALLMFIPTPDFSMP 491


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 281 SIPSLTNESWKQTFWCSNHHL*PQSTKVK 195
           SI  L + S   T  C N  + PQSTKVK
Sbjct: 184 SIIKLPDRSSSFTLQCINESVRPQSTKVK 212


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/51 (19%), Positives = 24/51 (47%)
 Frame = +3

Query: 99  NITFEHYLPTSNPSAQFPPRTFACATTKNHYRLDLRTLGLKMVVRTPKGLL 251
           N +F  Y  TSN      P +++  +  +++  D+     ++ +  PK ++
Sbjct: 406 NASFSSYSSTSNTDKSLRPSSYSAVSESSNFTHDVSRDNKEISLNAPKSII 456


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 296 RPVHDSIPSLTNESWKQTF 240
           +P+   IP LT+E W Q F
Sbjct: 132 KPITGVIPPLTDEQWNQEF 150


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 173 NNQESLSS*PSYSGAKDGGSNTKRSASNFRLSGMVSNRVPAEELVPEARTT 325
           +++ +L    S S   D  +N  ++ S+F+ SG+ S     +EL+PE   T
Sbjct: 550 SSETTLVKPSSTSSYIDTTNNVLKTNSSFKSSGLTSGPRNEKELLPEGIPT 600


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -2

Query: 312 SGTSSSAGTRFDTIPDKRKLEADLLVFEPPSLAPEYEGQDDNDSWLLH 169
           S T+ S      +IP+   LEA   ++ PPSL    E  D    W  H
Sbjct: 2   SNTNFSTSRSSKSIPELPNLEALRSLWPPPSL---NESGDTRSVWTTH 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,144
Number of Sequences: 5004
Number of extensions: 35114
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)