Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1434
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73906-4|CAA98117.1|  508|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AL110484-27|CAI46626.1|  397|Caenorhabditis elegans Hypothetical...    28   3.8  
AL117200-8|CAB55060.1|  183|Caenorhabditis elegans Hypothetical ...    28   5.0  
AC024818-4|AAF60782.5|  457|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z74043-8|CAA98538.1|  368|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AC006714-7|AAK29718.3|  612|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z73906-4|CAA98117.1|  508|Caenorhabditis elegans Hypothetical
           protein D2030.3 protein.
          Length = 508

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 307 SRGKNYACMQSRCVLAKLTILPKVSSIAETL 399
           +R   +AC++S CV  K +++P +  I  TL
Sbjct: 216 NRSVAFACLRSMCVNTKYSLIPMIGRIVSTL 246


>AL110484-27|CAI46626.1|  397|Caenorhabditis elegans Hypothetical
           protein Y38E10A.28 protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
 Frame = +3

Query: 189 YRLDLRTLGLKMVVRTPK-GLLPTFVCQ----GWYRIVYRPRNWFQRQELRMY 332
           + +DL TL  K   R     +L  F CQ    GW   VY  R W+ R   R Y
Sbjct: 22  FAIDLYTLETKNNSRFKALPILTVFYCQTVCFGWAGFVYNYRRWYIRSIKRFY 74


>AL117200-8|CAB55060.1|  183|Caenorhabditis elegans Hypothetical
           protein Y50E8A.12 protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 330 TCVVLASGTSSSAGTRFDTIPDKRK 256
           TCVV  S T +S  T F  +PDK++
Sbjct: 19  TCVVCGSSTLNSYVTSFTRVPDKQE 43


>AC024818-4|AAF60782.5|  457|Caenorhabditis elegans Hypothetical
           protein Y54H5A.4 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 60  VPXEWPKLKKNLINITFEHYLPTSNPSAQ 146
           V  EW KL KN  N+ F  Y P     AQ
Sbjct: 425 VREEWEKLDKNYRNLLFTDYRPVETNVAQ 453


>Z74043-8|CAA98538.1|  368|Caenorhabditis elegans Hypothetical
           protein T19B10.6 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 220 RWWFEHQKVCFQLSFVRDGIESCTGRGTGSRGKNYACMQSRCVLAKLTILPKVS 381
           RWW +HQ+ C   +F++       G+G GS+  N         L K    P+V+
Sbjct: 174 RWWSQHQQSCGG-NFLKVKEPEGYGQGKGSKRTNDKNKSGGPALKKTITPPRVT 226


>AC006714-7|AAK29718.3|  612|Caenorhabditis elegans Hypothetical
           protein Y119D3B.11 protein.
          Length = 612

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 398 RVSAIDETLGKIVSLASTQRDCIHA*FLPLEPVPRPVHDSIPSLTN 261
           R + +D+   KI++       C HA FLP  P P+ + +  P+L N
Sbjct: 229 RFTKLDDIFSKIIATG-----C-HAHFLPPRPPPKNIEEDDPALLN 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,537,111
Number of Sequences: 27780
Number of extensions: 201489
Number of successful extensions: 574
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)