Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1431
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    38   0.001
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    31   0.11 
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    27   3.1  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    26   4.1  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    26   5.4  

>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
 Frame = -2

Query: 608 FPGGKEYLMRAHFGXPSVECE--EVDGKPXIQVKFEYRFHNFWNSSKISENY*KKWIPSP 435
           F GGKE+ MRA  G PSV+ E  +V  K  +Q+KF      ++ +S I   Y K  I  P
Sbjct: 348 FAGGKEFFMRAEMGLPSVKNEDIQVQKKRPVQLKFAI---PYFTTSGIQVRYLK--ITEP 402

Query: 434 TLG-------KDITQNG-DYQLR 390
            L        + +TQNG +Y +R
Sbjct: 403 KLNYHAMPWVRYVTQNGTEYSIR 425


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
 Frame = -3

Query: 499 FTTSGIQVRYLKIIEKSG--YQALPWVR 422
           FT+SG+ V+YL++ E S   Y+++ WVR
Sbjct: 407 FTSSGLHVQYLRVSEPSNSKYKSIKWVR 434


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 515 KFEYRFHNFWNSSKISENY*KKWIPSPTLGKDITQN 408
           +FE  +   WNS + S  Y   W+P P  G +   N
Sbjct: 117 RFEETYSQ-WNSGERSTEYVPVWLPGPEKGSETIIN 151


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 518 LELXAFHQLPHIQQKAXQNE 577
           L +  FH++PHIQQ   Q++
Sbjct: 108 LNMYGFHKVPHIQQGVLQSD 127


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 155 HLMELYSLTFLKSALFLH*SQTYLVLVETVWKQIHQQ 265
           +L     +T +K  +F     ++L+L+E  WK   Q+
Sbjct: 260 YLQAKNEVTVIKGPMFFQFKPSHLILIEESWKNSDQE 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,798
Number of Sequences: 5004
Number of extensions: 38084
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)