Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1431
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467...    56   2e-08
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604...    56   2e-08
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760...    43   2e-04
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886...    29   4.2  
08_02_0635 + 19551869-19551996,19553131-19553233                       27   9.7  

>05_06_0262 -
           26746180-26746278,26746371-26746493,26746584-26746725,
           26746824-26746921,26747012-26747108,26747215-26747322,
           26747900-26748003,26748170-26748268,26748373-26748435,
           26748538-26748687,26748769-26748900
          Length = 404

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 25/26 (96%), Positives = 25/26 (96%)
 Frame = -3

Query: 499 FTTSGIQVRYLKIIEKSGYQALPWVR 422
           FT SGIQVRYLKIIEKSGYQALPWVR
Sbjct: 366 FTVSGIQVRYLKIIEKSGYQALPWVR 391



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = -2

Query: 611 SFPGGKEYLMRAHFGXPSVECEE--VDGKPXIQVKFE 507
           SFPGGKEY+ RA F  PS+  E+   + K  I+VKFE
Sbjct: 326 SFPGGKEYMCRAEFSLPSITSEDGMPEKKAPIRVKFE 362


>01_06_0412 +
           29159918-29160046,29160148-29160297,29160385-29160447,
           29160540-29160716,29160796-29160899,29162142-29162249,
           29162336-29162432,29162540-29162637,29162718-29162859,
           29162941-29163063,29163161-29163259
          Length = 429

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 25/26 (96%), Positives = 25/26 (96%)
 Frame = -3

Query: 499 FTTSGIQVRYLKIIEKSGYQALPWVR 422
           FT SGIQVRYLKIIEKSGYQALPWVR
Sbjct: 391 FTVSGIQVRYLKIIEKSGYQALPWVR 416



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = -2

Query: 611 SFPGGKEYLMRAHFGXPSVECEEV--DGKPXIQVKFE 507
           SFPGGK+Y+ RA F  PS+  EE   + K  I+VKFE
Sbjct: 351 SFPGGKDYMCRAEFSLPSITAEEAAPEKKAPIRVKFE 387


>02_05_0373 +
           28374298-28374380,28375126-28375303,28375975-28376065,
           28376162-28376256,28376379-28376468,28376789-28376837,
           28376941-28377079,28377224-28377340,28377437-28377527,
           28377604-28377746,28378009-28378123,28378439-28378483,
           28378565-28378645
          Length = 438

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = -3

Query: 499 FTTSGIQVRYLKIIEKSGYQALPWVRTLLR 410
           FT SG++VR+LK+ EKSGY  + WVR + R
Sbjct: 401 FTASGLRVRFLKVWEKSGYNTVEWVRYITR 430


>07_03_1297 +
           25587445-25587502,25587646-25587740,25588426-25588629,
           25588843-25588959,25589084-25589212,25589591-25589717,
           25590174-25590277,25590369-25590473,25590969-25591190,
           25591869-25591967
          Length = 419

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 499 FTTSGIQVRYLKIIEKS-GYQALPWVR 422
           + TS +QVRYL+I +KS  Y    WVR
Sbjct: 381 YNTSKLQVRYLQIAKKSKTYNPYRWVR 407


>08_02_0635 + 19551869-19551996,19553131-19553233
          Length = 76

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 365 WSFNRNCISHKNFXYAKIVI 306
           WSFN+ C+   NF + +++I
Sbjct: 42  WSFNKICLQRTNFIHLQLII 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,150,944
Number of Sequences: 37544
Number of extensions: 203238
Number of successful extensions: 283
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)