Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1431
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    59   2e-09
Z83115-5|CAJ85757.1|   58|Caenorhabditis elegans Hypothetical pr...    58   4e-09
Z83115-4|CAB05557.3|  422|Caenorhabditis elegans Hypothetical pr...    58   4e-09
L26291-1|AAA72418.1|  422|Caenorhabditis elegans protein ( Caeno...    58   4e-09
L26290-1|AAA27981.1|  441|Caenorhabditis elegans clathrin-associ...    32   0.40 
AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : short...    32   0.40 
AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : short...    32   0.40 
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81583-5|CAB04673.1|  574|Caenorhabditis elegans Hypothetical pr...    29   2.1  

>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
 Frame = -2

Query: 611 SFPGGKEYLMRAHFGXPSVECEEVDGKPXIQVKFEYRFHNFWN-SSKISENY*KKWIPSP 435
           SFPGG+EY+MR+ F  PS+  EE++G+P I VKFE  ++       +  +   K    + 
Sbjct: 350 SFPGGREYIMRSSFMLPSIGSEELEGRPPINVKFEIPYYTTSGLQVRYLKIIEKSGYQAL 409

Query: 434 TLGKDITQNGDYQLR 390
              + +TQNGDYQ+R
Sbjct: 410 PWVRYVTQNGDYQMR 424



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 24/26 (92%), Positives = 26/26 (100%)
 Frame = -3

Query: 499 FTTSGIQVRYLKIIEKSGYQALPWVR 422
           +TTSG+QVRYLKIIEKSGYQALPWVR
Sbjct: 388 YTTSGLQVRYLKIIEKSGYQALPWVR 413


>Z83115-5|CAJ85757.1|   58|Caenorhabditis elegans Hypothetical
           protein K11D2.3b protein.
          Length = 58

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 26/26 (100%), Positives = 26/26 (100%)
 Frame = -3

Query: 499 FTTSGIQVRYLKIIEKSGYQALPWVR 422
           FTTSGIQVRYLKIIEKSGYQALPWVR
Sbjct: 20  FTTSGIQVRYLKIIEKSGYQALPWVR 45



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = -2

Query: 548 EEVDGKPXIQVKFEYRFHNFWNSSKISENY----*KKWIPSPTLGKDITQNGDYQLR 390
           EE +G+P I+VKFE     ++ +S I   Y     K    +    + ITQNG+Y++R
Sbjct: 3   EESEGRPPIKVKFEI---PYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGEYEMR 56


>Z83115-4|CAB05557.3|  422|Caenorhabditis elegans Hypothetical
           protein K11D2.3a protein.
          Length = 422

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 26/26 (100%), Positives = 26/26 (100%)
 Frame = -3

Query: 499 FTTSGIQVRYLKIIEKSGYQALPWVR 422
           FTTSGIQVRYLKIIEKSGYQALPWVR
Sbjct: 384 FTTSGIQVRYLKIIEKSGYQALPWVR 409



 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
 Frame = -2

Query: 611 SFPGGKEYLMRAHFGXPSVECEEVDGKPXIQVKFEYRFHNFWNSSKISENY----*KKWI 444
           +FPGGKEYL+ AH   PSV  EE +G+P I+VKFE     ++ +S I   Y     K   
Sbjct: 346 NFPGGKEYLLTAHLSLPSVMSEESEGRPPIKVKFEI---PYFTTSGIQVRYLKIIEKSGY 402

Query: 443 PSPTLGKDITQNGDYQLR 390
            +    + ITQNG+Y++R
Sbjct: 403 QALPWVRYITQNGEYEMR 420


>L26291-1|AAA72418.1|  422|Caenorhabditis elegans protein (
           Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
          Length = 422

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
 Frame = -2

Query: 611 SFPGGKEYLMRAHFGXPSVECEEVDGKPXIQVKFEYRFHNFWNSSKISENY----*KKWI 444
           +FPGGKEYL+ AH   PSV  EE +G+P I+VKFE     ++ +S I   Y     K+  
Sbjct: 346 NFPGGKEYLLTAHLSLPSVMSEESEGRPPIKVKFEI---PYFTTSGIQVRYLKIIEKRGY 402

Query: 443 PSPTLGKDITQNGDYQLR 390
            +    + ITQNG+Y++R
Sbjct: 403 QALPWVRYITQNGEYEMR 420



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 25/26 (96%), Positives = 25/26 (96%)
 Frame = -3

Query: 499 FTTSGIQVRYLKIIEKSGYQALPWVR 422
           FTTSGIQVRYLKIIEK GYQALPWVR
Sbjct: 384 FTTSGIQVRYLKIIEKRGYQALPWVR 409


>L26290-1|AAA27981.1|  441|Caenorhabditis elegans
           clathrin-associated protein homologueprotein.
          Length = 441

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -3

Query: 547 RKLMESPQFK*NLNTDFTTSGIQVRYLKIIEK----SGYQALPWVRTLLR 410
           +K    P    N    F  SG++VRYLK+ E     S +  + WVR + R
Sbjct: 384 KKKWNRPPVSMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGR 433


>AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform b protein.
          Length = 435

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -3

Query: 547 RKLMESPQFK*NLNTDFTTSGIQVRYLKIIEK----SGYQALPWVRTLLR 410
           +K    P    N    F  SG++VRYLK+ E     S +  + WVR + R
Sbjct: 378 KKKWNRPPVSMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGR 427


>AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform a protein.
          Length = 441

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -3

Query: 547 RKLMESPQFK*NLNTDFTTSGIQVRYLKIIEK----SGYQALPWVRTLLR 410
           +K    P    N    F  SG++VRYLK+ E     S +  + WVR + R
Sbjct: 384 KKKWNRPPVSMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGR 433


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
            C13F10.4 protein.
          Length = 2076

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -2

Query: 236  RLALDRSVTNVKIMLTLKKLSCRAPLDVICTFQFQFNKIIYFNHRYL 96
            R+ LD+ +    IM+T    +  AP+DV+   Q  FNK+I    R+L
Sbjct: 1843 RIQLDKCI----IMVTAVVFTTSAPVDVVLGHQESFNKLIVLLKRHL 1885


>Z81583-5|CAB04673.1|  574|Caenorhabditis elegans Hypothetical
           protein T02G6.5 protein.
          Length = 574

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 224 DRSVTNVKIMLTLKKLSCRAPLDVICTFQFQFNKIIYFN 108
           D S+ N ++ + L +++    L + C F   FNK I FN
Sbjct: 411 DFSLRNDEVNILLDRINLSGKLSIECMFSSSFNKEILFN 449


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,407,032
Number of Sequences: 27780
Number of extensions: 209041
Number of successful extensions: 466
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)