Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1429
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    41   1e-04
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    40   4e-04
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   6.8  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   9.0  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 240 LENSSXEFVDIEAMFYSEVHALECKYXKLYKPVYEXRALIVNGTYEPNDDE 392
           L      + D+E+ F  E+  LE  Y K Y P+++ R+ +V G  EP ++E
Sbjct: 82  LRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVVRGADEPTEEE 132


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 270 IEAMFYSEVHALECKYXKLYKPVYEXRALIVNGTYEPNDDE 392
           I+  F  ++  LE KY K Y+P++  RA I+ G  EP DDE
Sbjct: 108 IQYEFRQKMLDLETKYEKKYQPIFSRRAEIIKGVSEPVDDE 148


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 314 FAFECMYFTVKHGLNV 267
           FA E  YFT KHG+ V
Sbjct: 176 FAAESAYFTTKHGVRV 191


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 324 LYKPVYEXRALIVNGTYEPNDDECLNPW 407
           +Y+  Y  R+  +  + +P+   CL+PW
Sbjct: 142 MYRNGYGRRSFRIEESVQPDTMSCLSPW 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,200
Number of Sequences: 5004
Number of extensions: 35652
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)