Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1429
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    42   5e-04
U64853-5|AAB04978.2|  460|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +3

Query: 240 LENSSXEFVDIEAMFYSEVHALECKYXKLYKPVYEXRALIVNGTYEPNDDECLNPWRDXT 419
           L+N   + + IE+ FY  VH LE ++   +K  ++ R  IV G  EP  ++   P  +  
Sbjct: 33  LKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGEVEPTKEQIDTPILEGL 92

Query: 420 EXEXL 434
           E + L
Sbjct: 93  EGDQL 97


>U64853-5|AAB04978.2|  460|Caenorhabditis elegans Hypothetical
           protein K11G9.5 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 416 VITPWVETFIIIRFICAIHNKSSXFINRLVKFXI 315
           V+  W+  F  +  I  +H  +  F NR++KF +
Sbjct: 248 VLCVWLNAFAEMSIIVFLHTYAPIFFNRILKFSV 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,330,501
Number of Sequences: 27780
Number of extensions: 211353
Number of successful extensions: 421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)