Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1428
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    47   2e-06
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    47   2e-06
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    29   0.52 
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    29   0.68 
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    29   0.68 
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    28   0.90 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   1.6  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   2.1  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   6.3  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    25   8.4  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   8.4  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   8.4  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 20/46 (43%), Positives = 34/46 (73%)
 Frame = +2

Query: 131 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
           +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ DL ++
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAER 66



 Score = 29.9 bits (64), Expect = 0.29
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +1

Query: 256 LREKGLIKQVVQHHGQVIYTRA 321
           L E+G+I++V QH  Q IYTRA
Sbjct: 63  LAERGVIQKVDQHSKQAIYTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 20/46 (43%), Positives = 34/46 (73%)
 Frame = +2

Query: 131 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
           +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ DL ++
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAER 66



 Score = 28.3 bits (60), Expect = 0.90
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 256 LREKGLIKQVVQHHGQVIYTR 318
           L E+G+I++V QH  Q IYTR
Sbjct: 63  LAERGVIQKVDQHSKQAIYTR 83


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
 Frame = -2

Query: 282 LFDETFFPKSMSALLAREPRTFN--LSDTTAGVISLYCGTSLYSFSYVGLSNNT---WLF 118
           +F+  F+   M+ +  +    FN  LSD    VIS   G + Y F  V LS+ T   W  
Sbjct: 198 VFNAHFYSSIMNEVAEKANAGFNISLSDYWGRVISRTLGDTTYGFPNVSLSSITSQEWYR 257

Query: 117 NLSRTFPLDHF 85
           N +  +P+  F
Sbjct: 258 NANFPYPIITF 268


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -2

Query: 255 SMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFL 76
           S+SA        FNL+    GV ++  G S  +F+ + + +  W F +    P+D   FL
Sbjct: 139 SLSADTIGRRWAFNLTFLFTGVFAVIAGASP-NFASICVFDALWSFGVGGNLPVDSAIFL 197

Query: 75  -ALP 67
            ALP
Sbjct: 198 EALP 201


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 152 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 39
           +M  YQ TP     HE   WT SS  L  H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 402 KNSRENGCNYGICMGFLNLXNNRYQCLWRTKH 497
           +NS   G   G+ +  L +   RY+CLW + H
Sbjct: 239 RNSGIKGLYRGLSVSMLKVAPGRYECLWLSCH 270


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 159  SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 61
            SF Y  L NN++L  +S +   ++ F++  PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 33  KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 131
           K HR    DP+   P RR GP  + V +   +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 447  NPYRYHSCSHFPSSFLNXRXVXFCYYFFNLYHSLC 343
            NP  Y SC + P    +   V F Y++ + + + C
Sbjct: 1327 NPEAYSSCQYCPYKNADELMVGFGYHYNHKWRNFC 1361


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 192 VISLYCGTSLYSFSYV-GLSNNTWLFNLSRTFPLDHFFFLALPPP 61
           V+ + C  +L  F ++ G+ N         T P  +F+ L  PPP
Sbjct: 37  VVVIICIAALIFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 353 IVYATGSSPLVARV*ITCPWCWTTCLMRP 267
           I+Y T ++P++  + +T   CW   L  P
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP 288


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = -2

Query: 429 SCSHFPSSFLNXRXVXFCYYFFNLYHSLCDWIIALGRTRVDHLP 298
           +C+     FL         Y F LY    D+II    T   HLP
Sbjct: 437 NCNSSSFDFLKAPLFQTLQYLFRLYPYQRDFIIEESLTNFSHLP 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,977
Number of Sequences: 5004
Number of extensions: 48977
Number of successful extensions: 187
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)