Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1428
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 72 4e-13
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 72 4e-13
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 56 3e-08
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771... 31 0.70
10_01_0146 - 1719997-1720386,1721498-1721515 29 2.1
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 27 8.6
04_03_0916 + 20794240-20794246,20794585-20796545 27 8.6
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 71.7 bits (168), Expect = 4e-13
Identities = 32/48 (66%), Positives = 41/48 (85%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDL 259
+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+ DL
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDL 84
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 256 LREKGLIKQVVQHHGQVIYTRAT 324
L ++GLI+ V H Q IYTRAT
Sbjct: 84 LMDRGLIRMVSVHCSQQIYTRAT 106
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 71.7 bits (168), Expect = 4e-13
Identities = 32/48 (66%), Positives = 41/48 (85%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDL 259
+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+ DL
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDL 84
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 241 KSTHRLREKGLIKQVVQHHGQVIYTRAT 324
++ + L +GLI+ V H Q IYTRAT
Sbjct: 79 RAINDLMTRGLIRMVSVHSSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLK 220
+NN VLFDK TY+KL EVP+YK ITP+V+SERL+
Sbjct: 971 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 256 LREKGLIKQVVQHHGQVIYTRAT 324
L +G I+ V H Q+IYTRAT
Sbjct: 1102 LESRGAIRVVSVHSSQLIYTRAT 1124
>03_05_0586 -
25875703-25876332,25876426-25876713,25877064-25877194,
25877299-25877812
Length = 520
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 7 REGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPGV 132
R G G + + E G+ +WR+ +EEE Q+K + E+ V
Sbjct: 345 RGGRGGESEERRRERGKGKWREEEEEEEEQQKGQEEEEEEQV 386
>10_01_0146 - 1719997-1720386,1721498-1721515
Length = 135
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 3 RTRRLRPNSLKKHRRRRKDPVAAKPRRRS 89
R ++P+ + RRRR +P +PRRR+
Sbjct: 77 RAAEMQPDDGGQRRRRRSEPATTQPRRRA 105
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 13 GFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPG 129
GFG S N+ +RWR + +++ Q Q ++PG
Sbjct: 427 GFGIAISANSMLVEYLRWRSRRNQQLAQTVDDGQRQEPG 465
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 206 IRQQV*LACTVGLPCTVSH-MWVYQTTPGCSTCHELFLWTTSSSWLCRHRI 57
I Q + L +G C + VY+ P S H+LF T+ +W R+ I
Sbjct: 399 IIQHINLVKLIGFCCEGGRRLLVYEHMPNRSLDHQLFQTNTTLTWNIRYEI 449
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,842,661
Number of Sequences: 37544
Number of extensions: 319306
Number of successful extensions: 882
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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