Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1428
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal prote... 73 2e-13
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical p... 29 1.9
Z81509-4|CAB04152.2| 236|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z66516-9|CAN99713.1| 455|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z66516-8|CAB60308.2| 459|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z50015-2|CAN99700.1| 455|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z50015-1|CAB60292.2| 459|Caenorhabditis elegans Hypothetical pr... 29 3.3
L39212-1|AAC37255.1| 459|Caenorhabditis elegans transcription f... 29 3.3
AL021172-3|CAN99704.1| 455|Caenorhabditis elegans Hypothetical ... 29 3.3
AL021172-2|CAB60307.2| 459|Caenorhabditis elegans Hypothetical ... 29 3.3
AF016449-12|AAG24004.2| 365|Caenorhabditis elegans Serpentine r... 28 4.4
AC024776-7|AAK68469.1| 411|Caenorhabditis elegans Nuclear pore ... 28 5.8
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ... 28 5.8
AF016428-2|AAO26002.1| 316|Caenorhabditis elegans Serpentine re... 27 7.7
>U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 25 protein.
Length = 117
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/51 (70%), Positives = 41/51 (80%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
LNN VLFD+ TY+KLYKEV YKLITP+VVSERLKVR SLA+ L +L K
Sbjct: 40 LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAK 90
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +1
Query: 256 LREKGLIKQVVQHHGQVIYTRATKGDDPV 342
L+ KGL+K VV HHGQV+YTRATK D +
Sbjct: 87 LQAKGLVKCVVHHHGQVVYTRATKEADVI 115
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 3 RTRRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEK 104
R RR S + RRR+ P AA PRRR P+ +
Sbjct: 465 RRRRSPSGSKSRSPRRRRSPAAA-PRRRQSPQRR 497
>Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical
protein C53A5.13 protein.
Length = 681
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 1 EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 102
E REG G + + RIRW+ +EE+V R+
Sbjct: 25 EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58
>Z81509-4|CAB04152.2| 236|Caenorhabditis elegans Hypothetical
protein F21A3.6 protein.
Length = 236
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +2
Query: 149 YEKLYKEVPQYKLITP---AVVSERLKVRGSLARRA---LIDLGKKVSSNR*SNTMGR*S 310
+ +L+ E P+YKLI P A+ L L R A L LGK + S R +G+
Sbjct: 112 FVRLFSEYPRYKLIWPQFRAIPDSSLMNAVELRRHASVYLNGLGKIIDSMRDEEALGKSM 171
Query: 311 TRV 319
+R+
Sbjct: 172 SRI 174
>Z66516-9|CAN99713.1| 455|Caenorhabditis elegans Hypothetical
protein W03C9.4b protein.
Length = 455
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 119 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDLGKKVSSNR*SNT 295
NN+ L + PT K + P + +ITP +R S A + G V S+ S+T
Sbjct: 368 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 426
>Z66516-8|CAB60308.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 119 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDLGKKVSSNR*SNT 295
NN+ L + PT K + P + +ITP +R S A + G V S+ S+T
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 430
>Z50015-2|CAN99700.1| 455|Caenorhabditis elegans Hypothetical
protein W03C9.4b protein.
Length = 455
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 119 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDLGKKVSSNR*SNT 295
NN+ L + PT K + P + +ITP +R S A + G V S+ S+T
Sbjct: 368 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 426
>Z50015-1|CAB60292.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 119 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDLGKKVSSNR*SNT 295
NN+ L + PT K + P + +ITP +R S A + G V S+ S+T
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 430
>L39212-1|AAC37255.1| 459|Caenorhabditis elegans transcription
factor protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 119 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDLGKKVSSNR*SNT 295
NN+ L + PT K + P + +ITP +R S A + G V S+ S+T
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 430
>AL021172-3|CAN99704.1| 455|Caenorhabditis elegans Hypothetical
protein W03C9.4b protein.
Length = 455
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 119 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDLGKKVSSNR*SNT 295
NN+ L + PT K + P + +ITP +R S A + G V S+ S+T
Sbjct: 368 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 426
>AL021172-2|CAB60307.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 119 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDLGKKVSSNR*SNT 295
NN+ L + PT K + P + +ITP +R S A + G V S+ S+T
Sbjct: 372 NNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVSSTPSST 430
>AF016449-12|AAG24004.2| 365|Caenorhabditis elegans Serpentine
receptor, class t protein71 protein.
Length = 365
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Frame = -2
Query: 264 FPKSMSALLAREPRTFNLS-DTTAGVISLYCGTSLYSF-SY-----VGLSNNTWLFNLSR 106
FP M LL +P + DT ++ + C ++LY + SY G S ++WL+ R
Sbjct: 136 FPLEMLFLLNFQPELYECQPDTINNIVLVLCTSTLYCYISYHLLFNFGYSTSSWLYKSKR 195
>AC024776-7|AAK68469.1| 411|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform a protein.
Length = 411
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -2
Query: 345 CDWIIALGRTRVDHLPMVL-DYLFDETFFPK--SMSALLAREPRTFNLSDTTAGVISLYC 175
C +++ +++ H +L + DET F S+ AL A + NL TTA + LY
Sbjct: 283 CAKFLSVPISKIAHEAHILTQFGHDETSFHSITSIKALEASQSAALNLVATTAKGVRLYF 342
Query: 174 GTSLYSFSYVGLSNNT 127
S S + + NN+
Sbjct: 343 SVSTGPQSTMAMFNNS 358
>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform b protein.
Length = 1090
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -2
Query: 345 CDWIIALGRTRVDHLPMVL-DYLFDETFFPK--SMSALLAREPRTFNLSDTTAGVISLYC 175
C +++ +++ H +L + DET F S+ AL A + NL TTA + LY
Sbjct: 198 CAKFLSVPISKIAHEAHILTQFGHDETSFHSITSIKALEASQSAALNLVATTAKGVRLYF 257
Query: 174 GTSLYSFSYVGLSNNT 127
S S + + NN+
Sbjct: 258 SVSTGPQSTMAMFNNS 273
>AF016428-2|AAO26002.1| 316|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 65 protein.
Length = 316
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 255 SMSALLAREPRTFNLSDTTAGVISLYCG 172
S++ ++ E F+LSDT ++ L+CG
Sbjct: 2 SVNRTISLENGKFDLSDTIVNIVELFCG 29
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,423,853
Number of Sequences: 27780
Number of extensions: 278812
Number of successful extensions: 806
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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