Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1428
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   6.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.2  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 348 NYDIS*KNNNKKXXNXNSKNSRENGCNYG 434
           N + S  NNN    N N+  + +NG   G
Sbjct: 234 NTNASNNNNNNNNNNNNNNGANDNGNGNG 262


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 144 GLSNNTWLFNLSRTFP 97
           GLS+  W++  S T P
Sbjct: 542 GLSHGNWIYPASMTIP 557


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 336 SSRINYDIS*KNNNKKXXNXNSKNSRENGCNY 431
           SS  N  I   NN K   N N+ N+     NY
Sbjct: 316 SSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNY 347


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 405 FLNXRXVXFCYYFFNLYHSLCD 340
           F++   + F Y F +++  LCD
Sbjct: 473 FVSDAVMAFAYAFRDMHKELCD 494


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,198
Number of Sequences: 438
Number of extensions: 3816
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)