Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1422
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    64   2e-11
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    25   7.9  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 26/49 (53%), Positives = 36/49 (73%)
 Frame = +2

Query: 482 IRILFYYFTAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLI 628
           +  LF    AYEY  A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+
Sbjct: 181 LSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLV 229



 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
 Frame = +3

Query: 297 SPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKXRLF 470
           SP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N       L+
Sbjct: 117 SPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLY 176

Query: 471 LTILLGFYF 497
           +TI L F F
Sbjct: 177 MTIALSFLF 185



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 155 RDISREGTYQGKHTILVNKGLR*G 226
           RD+S E    G HT  V KGL+ G
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIG 92


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 634 YSTFNNHFLKNHHFG 678
           +S  NNHF K HH G
Sbjct: 158 HSNANNHFTKTHHQG 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,111
Number of Sequences: 5004
Number of extensions: 36594
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)