Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1422
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   4.9  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   8.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   8.5  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 574 SNRISWNSCNNWNFISINLLYSTFNNHFLKNH 669
           SN+   N+ NN+N  + N  Y+ +NN+   N+
Sbjct: 319 SNKTIHNN-NNYNNNNYNNNYNNYNNNNYNNY 349


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 574 SNRISWNSCNNWNFISINLLYSTFNNHFLK 663
           SN   +++ NN+N    N   + +NN++ K
Sbjct: 86  SNNYKYSNYNNYNNNYNNNYNNNYNNNYKK 115


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 574 SNRISWNSCNNWNFISINLLYSTFNNHFLK 663
           SN   +++ NN+N    N   + +NN++ K
Sbjct: 86  SNNYKYSNYNNYNNNYNNNYNNNYNNNYKK 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,460
Number of Sequences: 438
Number of extensions: 2457
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)