Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1419
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   1.5  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    24   4.5  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    24   4.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   4.5  

>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 141 EFHSFCGRYDENSRNCEMKQMTQRKLHFLHLDRIPCQ 251
           +++SF  R + +  N E   +  R L + H +R+ CQ
Sbjct: 284 DWYSFVNRDNRSLANDEAIDLLNRLLRYDHQERLTCQ 320


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 248 AGDTVKVQKVQLPLCHLLHLAVTTILVV 165
           A D VK  K  +  CH LHLA    L +
Sbjct: 815 AFDFVKGDKRSVEYCHYLHLAAEEALKI 842


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 217 SFLCVICFISQLRLF--SS*RPQKLWNS 140
           +FLC+ CFI +  LF  S   P+ L+N+
Sbjct: 710 TFLCISCFIMRHHLFVWSVFSPKLLYNA 737


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 108  LPCVNC*FLI*NNPCFILRPGYIYVFFFVNK 16
            LPCV C F    +    L PG++  F  V K
Sbjct: 2108 LPCVECFFKYKKDALHTLLPGFMRCFHKVAK 2138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,023,945
Number of Sequences: 5004
Number of extensions: 15988
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)