Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1417
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0398 - 3515439-3515573,3515965-3516516 35 0.069
05_07_0172 - 28136987-28137124,28137458-28138009 33 0.28
04_01_0301 + 4016588-4016627,4016715-4018837 32 0.48
06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458 31 0.64
06_01_0459 + 3272479-3272817,3272927-3272992,3273104-3273169,327... 31 1.1
01_07_0325 - 42745611-42745700,42745939-42745971,42746069-427461... 30 1.5
02_04_0290 - 21627733-21628353,21628424-21628663,21628874-216292... 29 3.4
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 29 4.5
04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036 29 4.5
11_06_0185 + 21018045-21022307 28 6.0
09_02_0533 - 10325681-10326211,10326260-10326328,10326758-103268... 28 6.0
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 28 6.0
>08_01_0398 - 3515439-3515573,3515965-3516516
Length = 228
Score = 34.7 bits (76), Expect = 0.069
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Frame = +2
Query: 518 LREK---NEQQQEYRLKYLQAQQEVEELKRQLDGIEFDNQ 628
LREK NE Q E + + LQAQ ++E+LK+QL+ + + Q
Sbjct: 86 LREKESFNELQDEIQRQILQAQTDIEDLKKQLEQSKIERQ 125
>05_07_0172 - 28136987-28137124,28137458-28138009
Length = 229
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 3/33 (9%)
Frame = +2
Query: 518 LREK---NEQQQEYRLKYLQAQQEVEELKRQLD 607
LREK NE Q E + + LQAQ ++EELK++L+
Sbjct: 86 LREKESFNELQDEIQRQILQAQTDIEELKKKLE 118
>04_01_0301 + 4016588-4016627,4016715-4018837
Length = 720
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/40 (27%), Positives = 28/40 (70%)
Frame = +1
Query: 37 IQSEDVEITGGSILLQKQLGDMEGEVKEIQMEIAAIKRDR 156
+Q+++ E+ + ++++ G E EVK++QME++A+ ++
Sbjct: 207 VQAKNDELLSNVLAIKEKYGQSEAEVKKLQMELSALVMEK 246
>06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458
Length = 1217
Score = 31.5 bits (68), Expect = 0.64
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = -2
Query: 636 KLAWLSNSIPSNCLFNSSTSCCACRYFNLYSCCCSFFS 523
++A S+S+PS+CLF+S + + Y L CCSF S
Sbjct: 899 EVAITSDSLPSSCLFDSLMA--SASYLILLVNCCSFLS 934
>06_01_0459 +
3272479-3272817,3272927-3272992,3273104-3273169,
3274220-3274537,3274595-3274701,3274816-3274867
Length = 315
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 488 ERGIGGNKMTLREKNEQQQEYRLKYLQAQQEVEELKRQLDGIEFDNQASF 637
+RG GG + +Q+Q R + Q ++E EE++RQ+ G A+F
Sbjct: 4 QRGRGGFDELVLLHQQQEQRRRREQQQEEEEEEEVRRQMFGAVVGGLAAF 53
>01_07_0325 -
42745611-42745700,42745939-42745971,42746069-42746182,
42746325-42746417,42746502-42746597,42746820-42746924,
42747027-42747284,42748740-42749402
Length = 483
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 518 LREKNEQQQEYRLKYLQAQQEVEELKRQLDGIEFDNQASF 637
L +NE + YR+KY ++ Q+V + +LD E NQ F
Sbjct: 205 LDAQNELHELYRVKYYKSLQQVSGTRSKLDHDEMINQYPF 244
>02_04_0290 -
21627733-21628353,21628424-21628663,21628874-21629214,
21630934-21631612,21631893-21631962,21632063-21632190
Length = 692
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 479 QRIERGIGGNKMTLREKNEQQQEYRLKYLQAQQEVEELKRQLDG 610
Q + G K + + + + KYL+ Q E++ L++Q+DG
Sbjct: 577 QSFQEGWAAAKKDINTLKFELESMKAKYLELQHEMDALQKQVDG 620
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 96 GYGRRSKRNPDGNSRYKT*PIRCDDEETDECFYAGIGIS 212
GYG S+++P + R K +RC +E + IG++
Sbjct: 639 GYGDMSRKSPVSDKRAKVEALRCRADEEKSKYEKSIGVT 677
>04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036
Length = 762
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +2
Query: 479 QRIERGIGGNKMTLREKNEQQQEYRLKYLQAQQEVEELKRQLDGIEFDNQ 628
++I++ + G L E + Q + + KYL Q+E++ + Q++ + Q
Sbjct: 457 EKIKKAMEGQASALHEMSAQLRVAQEKYLDKQEEIDRARAQVEELNVSLQ 506
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +2
Query: 446 RKRGGGFENANQRIERGIGGNKMTLREKNEQQQEYRLKYLQAQQEVEELKRQLDGIEFDN 625
R+ GGG +++ ERG G + ++ ++ E R + Q +QE E K + + + +
Sbjct: 437 RQGGGGERKEDEKDERGDGEEEGKEERRDMEKGEERKEQQQEEQEKEGRKEEQNEVRKET 496
Query: 626 Q 628
+
Sbjct: 497 E 497
>09_02_0533 -
10325681-10326211,10326260-10326328,10326758-10326855,
10326968-10327117,10327848-10327976,10328063-10328999
Length = 637
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = -2
Query: 633 LAWLSNSIPSNCLFNSSTSCCA----CRYFNL-YSCCCS 532
L W +S PS C + S+ C + C ++L Y C CS
Sbjct: 260 LDWYISSDPSECTYESAPDCLSANSFCHAYDLGYKCHCS 298
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 536 QQQEYRLKYLQAQQEVEELKRQLDGIEFDNQA 631
Q + R K Q +++ + LKRQLD ++ +N A
Sbjct: 176 QNRRARWKTKQLEKDYDALKRQLDAVKAENDA 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,004,022
Number of Sequences: 37544
Number of extensions: 297732
Number of successful extensions: 957
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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