Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1416
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    28   1.0  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   3.2  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   5.6  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   7.3  

>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +1

Query: 397 SXFPYTDPDLLLLKATSXANMQCLLQCLGVLHXPAQVPTLTV 522
           S F   D D   L AT      C L   G+LH P  VP L +
Sbjct: 407 SLFSLRDTDWSALLATVPE--MCALTFFGILHVPINVPALAI 446


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 280  PLQTSEQLAVHDAMASARQQLQATXLSDADLARCIES 390
            P+  SEQL VHD +      L+++    A   RC+ S
Sbjct: 1760 PILDSEQLVVHDFLEELFSSLKSSEEDFALRTRCVTS 1796


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 275 LAPITLVVSHAMALSPWTHSWRARA*VALSFNMSPNA 165
           LA ++  + +A+ L+PWT S      +  +FNM P+A
Sbjct: 196 LAYVSFSIIYALFLNPWTGSLDPFKSI-FNFNMDPDA 231


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 415  PCKGRXNLXTLCSAXGPRH*XRSLVAAAWXTPW 317
            PC+G   L  + S  G +   R+++  AW   W
Sbjct: 1712 PCEGACTLGIIESPVGIKSVERAIIDKAWEEGW 1744


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,341,692
Number of Sequences: 5004
Number of extensions: 20582
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)