Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1416
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0226 - 18420293-18420697                                         30   1.1  
07_03_1016 - 23313210-23313827,23314649-23314717                       30   1.4  
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657           29   1.8  
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    28   5.6  
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066     28   5.6  
08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831           27   7.5  
09_03_0097 + 12335425-12336197,12336438-12336618,12337409-123375...    27   9.9  
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493...    27   9.9  

>06_03_0226 - 18420293-18420697
          Length = 134

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = -2

Query: 418 DPCKGRXNLXTLCSAXGPRH*XRSLVAAAWXTP------WRRGPRAARTSAGAG 275
           DP +G        +A  P      +VAAA  TP      WRRGPR A+++AG G
Sbjct: 13  DPAQGALPRADPAAAPSPTTTTTRVVAAA-ATPTTSTCGWRRGPRPAQSAAGDG 65


>07_03_1016 - 23313210-23313827,23314649-23314717
          Length = 228

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +3

Query: 180 VEAESYLRPCAPGVGP-RAQGHCVRYHQGDGGQPAPADVRAARGPR 314
           V+   +LRP     GP  A     R H G GGQP   D  A  G R
Sbjct: 58  VDLSDHLRPIMSFAGPFYAVTTHQRCHHGGGGQPGEPDAAAGGGRR 103


>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
          Length = 1136

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 298 ARTSAGAGWPPSPWWYLTQWP*A--RGPTPGAHGRR 197
           AR S G+G PP P W     P    RG   GA GRR
Sbjct: 41  ARMSTGSGSPPPPTWGNRSVPVCRWRGVACGARGRR 76


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = -2

Query: 331 WXTPWRRGPRAARTSAGAGWPPSPWWYLTQWP*ARGPTPG 212
           W T     P A    AGA W  +P      W  A  P PG
Sbjct: 247 WGTDAAAQPAAIPAQAGADWTAAPAPAAGGWDTAAAPAPG 286


>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
          Length = 646

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -3

Query: 369 VRVTEXGRXXXLPGXRHGVVDRELLGRLQGRVGPHHLGGISRNGPEPV----DPLLARTG 202
           +R  E  R    PG RHG   +++    Q  +  + LGG   + PE V     P+LA TG
Sbjct: 211 IRDDECCRNCGEPGHRHGTTGKKMDDEYQNFL--NELGG---SAPESVTKSSGPMLALTG 265

Query: 201 VGSS 190
            G S
Sbjct: 266 SGGS 269


>08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831
          Length = 757

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 22/52 (42%), Positives = 24/52 (46%)
 Frame = +3

Query: 186 AESYLRPCAPGVGPRAQGHCVRYHQGDGGQPAPADVRAARGPRRHGVXQAAA 341
           A +Y R  AP V       C R   G GGQ A A   A  G RR G  +AAA
Sbjct: 435 AAAYERHIAPAV---KLDICAREGGGGGGQGAAA-AAAVAGRRRRGGGKAAA 482


>09_03_0097 +
           12335425-12336197,12336438-12336618,12337409-12337572,
           12338132-12338393,12338488-12338604
          Length = 498

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -2

Query: 352 RSLVAAAWXTPWRRGPRAARTSAGAGW 272
           R   AA W   WRR   AA TS  AGW
Sbjct: 50  REQEAARW---WRRREDAATTSGAAGW 73


>02_05_0272 -
           27348537-27348728,27349035-27349192,27349292-27349323,
           27349420-27349514,27349614-27349687,27349800-27349878,
           27350015-27350078,27350156-27350218,27350300-27350442,
           27350566-27350703,27350792-27350913,27350993-27351158,
           27351276-27351398,27351609-27351680,27351773-27351880,
           27352481-27352597,27352727-27352865,27352974-27353080,
           27353167-27353276,27353892-27354025,27354106-27354255,
           27354329-27354549,27354647-27355318
          Length = 1092

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/59 (32%), Positives = 22/59 (37%)
 Frame = +3

Query: 210 APGVGPRAQGHCVRYHQGDGGQPAPADVRAARGPRRHGVXQAAATSDRXQ*RGPXALHR 386
           APG GP  +    + H G G QPA        G    G  Q      R Q RG    H+
Sbjct: 24  APGRGPSQRPERAQQHGGGGWQPANPQYAQQAG---RGGGQHQGRGGRYQGRGGPTSHQ 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,692,626
Number of Sequences: 37544
Number of extensions: 220071
Number of successful extensions: 928
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)