Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1416
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28928-13|AAL16321.1|  339|Caenorhabditis elegans Hypothetical p...    29   2.9  
U28928-12|AAL16320.2|  597|Caenorhabditis elegans Hypothetical p...    29   2.9  
AL132863-1|CAB60573.1|  477|Caenorhabditis elegans Hypothetical ...    28   5.1  

>U28928-13|AAL16321.1|  339|Caenorhabditis elegans Hypothetical
           protein C44B7.2b protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/56 (30%), Positives = 19/56 (33%)
 Frame = +3

Query: 171 RRHVEAESYLRPCAPGVGPRAQGHCVRYHQGDGGQPAPADVRAARGPRRHGVXQAA 338
           R H +   Y  P + G   R  GH   Y    GG P P   R        G  Q A
Sbjct: 227 RNHYDRHDYQAPSSYGYSSRGGGHSDYYGGDRGGPPHPPPSRYRDDYEDRGYAQPA 282


>U28928-12|AAL16320.2|  597|Caenorhabditis elegans Hypothetical
           protein C44B7.2a protein.
          Length = 597

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/56 (30%), Positives = 19/56 (33%)
 Frame = +3

Query: 171 RRHVEAESYLRPCAPGVGPRAQGHCVRYHQGDGGQPAPADVRAARGPRRHGVXQAA 338
           R H +   Y  P + G   R  GH   Y    GG P P   R        G  Q A
Sbjct: 247 RNHYDRHDYQAPSSYGYSSRGGGHSDYYGGDRGGPPHPPPSRYRDDYEDRGYAQPA 302


>AL132863-1|CAB60573.1|  477|Caenorhabditis elegans Hypothetical
           protein Y37H2A.1 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 129 KRQQLQDLHH--KLRVRRHVEAESYLRPCAPGVGPR 230
           +RQQL+ + H    R+    +A  +  PC  GVGPR
Sbjct: 399 ERQQLEAIRHIPLNRILLETDAPYFRPPCFEGVGPR 434


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,845,205
Number of Sequences: 27780
Number of extensions: 140360
Number of successful extensions: 466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)