Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1413
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    29   0.44 
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   7.1  

>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 229 QLHMTTGTRNALTSIRKANHFFCIFKDASLIF 324
           + H TTGT N   SI++  H++ +F+ A   F
Sbjct: 630 ETHDTTGTSNFAVSIQQEKHYYPVFQPAPTEF 661


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 105 CGNAQLGYVLCSRVLTEVGLQRR*CRSIIKL*I*FKNNTRASIAY 239
           C N+   +VLC ++   +G Q +   S +++   ++ NT + IA+
Sbjct: 708 CSNSLFYFVLCMQLEESIGTQEQRLLSFLRV---YEKNTLSEIAH 749


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,546
Number of Sequences: 5004
Number of extensions: 40555
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)