Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1413
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0139 - 41385823-41386656                                         28   7.4  
01_01_0117 + 864966-865686,866860-866883,867006-868063                 28   7.4  
01_01_0113 + 842543-843191,844964-844987,845202-846274                 28   7.4  
01_01_0102 + 769442-770159,770710-770805,771340-771363,771470-77...    28   7.4  
04_03_0343 + 14683782-14684222                                         27   9.7  

>01_07_0139 - 41385823-41386656
          Length = 277

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 511 RSRARVARRCSDWCRRAGVARRYSVGAAAA 422
           RSR R AR    WCR A     + +G  +A
Sbjct: 226 RSRGRSARGSPSWCRSAAATCSWCLGCTSA 255


>01_01_0117 + 864966-865686,866860-866883,867006-868063
          Length = 600

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 293 FVYLKMPH*YLSVLDFKCTLISR 361
           F YL  P+ Y+S+L   CT++S+
Sbjct: 166 FWYLAYPYEYMSILPLGCTIVSK 188


>01_01_0113 + 842543-843191,844964-844987,845202-846274
          Length = 581

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 293 FVYLKMPH*YLSVLDFKCTLISR 361
           F YL  P+ Y+SVL   CT+IS+
Sbjct: 163 FWYLADPYTYMSVLPLDCTVISK 185


>01_01_0102 +
           769442-770159,770710-770805,771340-771363,771470-772542
          Length = 636

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 293 FVYLKMPH*YLSVLDFKCTLISR 361
           F YL  P+ Y+S+L   CT++S+
Sbjct: 165 FWYLAYPYTYMSILPLGCTIVSK 187


>04_03_0343 + 14683782-14684222
          Length = 146

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 376 SFKLARVRPPXADSVVLPPHRRCSD 450
           S +L RV P  +D+++L PH  C D
Sbjct: 61  SLQLPRVVPTRSDAIMLDPHVGCPD 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,545,324
Number of Sequences: 37544
Number of extensions: 284483
Number of successful extensions: 748
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)