Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1412
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 58 1e-09
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 41 2e-04
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 30 0.40
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 30 0.40
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 29 0.92
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 28 1.2
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 2.1
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 27 3.7
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 26 4.9
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 26 6.5
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 8.6
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 8.6
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 58.0 bits (134), Expect = 1e-09
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Frame = +3
Query: 261 THLCIRELEKKGKVTSIVTQNVDRLHHKAG--SEKVIELHGTSYLVQCLKCPYEIDRHEL 434
+H IR LEKK K++++ TQN+D L K G K+I+ HG+ C+KC +++D EL
Sbjct: 227 SHAFIRLLEKKNKLSTLFTQNIDNLEKKTGLSDNKIIQCHGSFATATCIKCKHKVDGSEL 286
Query: 435 QE 440
E
Sbjct: 287 YE 288
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 563 GPLKPDIVFFGDNVP 607
G +KPDI FFG+ +P
Sbjct: 337 GIMKPDITFFGEALP 351
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 40.7 bits (91), Expect = 2e-04
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 261 THLCIRELEKKGKVTSIVTQNVDRLHHKAG--SEKVIELHGTSYLVQCLKCPYEIDRHEL 434
TH IR L K + TQN+D L AG + +IE HG+ +C++C YE+ E
Sbjct: 99 THYFIRLLHDKRLLQKCYTQNIDTLERLAGVPDKALIEAHGSFQYSRCIEC-YEMAETEY 157
Query: 435 QE--ILTENNPDMESSFSMIRP 494
I+ + P S +I+P
Sbjct: 158 VRACIMQKQVPKCNSCKGLIKP 179
Score = 29.5 bits (63), Expect = 0.53
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 536 RAPLWPKCEGPLKPDIVFFGDNVPKYRVEQVRK 634
+ P C+G +KP IVF+G+ +P E + K
Sbjct: 166 QVPKCNSCKGLIKPMIVFYGEGLPMRFFEHMEK 198
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 100 GIPDYRSEDVGLYARSNHKPIQYQEFV 180
GIPD+RS + G+Y + Y E V
Sbjct: 43 GIPDFRSPETGIYNNLQRFNLPYAEAV 69
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 29.9 bits (64), Expect = 0.40
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +3
Query: 237 IQLCATNVTHLCIRELEK--KGKVTSIVTQNVDRLHHKAGSEKVIEL-HGTSYLVQCLKC 407
++L A N C+ + K G+ +I ++ K+ K+ + H TSY +Q ++
Sbjct: 959 LELFAANGLSTCVHRIGKVLSGQAQTISFSRSGKIIFKSTRSKLHGIWHETSYKMQEIRD 1018
Query: 408 PYEIDRHELQEILTENNPDM 467
E R E++ I N+P +
Sbjct: 1019 NPECARQEMENIADNNDPGL 1038
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 29.9 bits (64), Expect = 0.40
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = +3
Query: 183 VSESKAKVLGKKLYRLAEIQLCATNVTHLCIRELEKKGKVTSIVTQNVDRLHHKAGSEKV 362
++E+ A+V GK++Y +I+ + + + ++V N R + + +V
Sbjct: 192 INETVAQVSGKQIYNTEKIRSNICDAVQSSRNGICRHVDARAMVNLNHSRWERRYYARQV 251
Query: 363 IELHGTSYLVQCL 401
LH YL +CL
Sbjct: 252 TYLHNNGYLRKCL 264
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 28.7 bits (61), Expect = 0.92
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 231 PTYIISCPVPLPYFRILHKFLILYRFVITTGIQTNILRSVVR 106
PTY+ P+ PYFR L + YR +T ++ + + +R
Sbjct: 335 PTYVP--PIARPYFRQLLSLCLEYRLQVTDPVEVKQINTFIR 374
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 509 LSREQVEKFRAPLWPKCE--GPLKPDIVFFGDNVPK 610
+S VEKF + K + GP+K D FF +N PK
Sbjct: 111 VSGVSVEKFTKAYFAKQKRSGPVKKDEAFFAENAPK 146
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 665 QIPASTASHFFF*LVPRDIWVH 600
Q+ AST H +P DIWVH
Sbjct: 1509 QVEASTRGHIKCSSIPADIWVH 1530
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +3
Query: 351 SEKVIELHGTSYL-----VQCLKCPYEIDRHELQEILTENNPDMESSFS 482
+EKV+ +G SY +Q KCP+ I+ + + +NP+M S ++
Sbjct: 82 NEKVVGQNGDSYKEKDLKIQLGKCPFTINAYWRSMCIQFDNPEMLSQWA 130
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 217 FLPSTFALLSDTSQILDTV*VCDYYGHTDQHPPIC 113
FL S F + T+Q + T+ +C ++G P+C
Sbjct: 212 FLFSVFQIAVATAQDIQTIMICRFFGGYGACVPLC 246
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 6.5
Identities = 20/86 (23%), Positives = 43/86 (50%)
Frame = +3
Query: 90 VVVRYS*LQIGGCWSVCP**SQTYTVSRICEVSESKAKVLGKKLYRLAEIQLCATNVTHL 269
+V +S L+I V P SQ TVS ++ SK + GK+ R+++ ++N +
Sbjct: 535 IVTFFSILRIRSS-EVRPLKSQKNTVSINNKIDTSKRRRKGKRRKRVSDEHSASSNFNEI 593
Query: 270 CIRELEKKGKVTSIVTQNVDRLHHKA 347
+ ++ + I+++N+ + K+
Sbjct: 594 ESQASFEQNQTLDILSENIVEIQDKS 619
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 303 SLFPSSLVLEYRDV*RWLHTTESRPTYIIS 214
S+FPS + Y + WL+TT+S T ++S
Sbjct: 2116 SIFPS---ISYAYLGNWLYTTKSEKTELVS 2142
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 8.6
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = -3
Query: 609 LGTLSPKNTISGFKGPSHFGQSGARNFSTCSLDNQHRHPVLSWRNYFPYLDYSL 448
LG N+ + FK PSH QS N S N P L W +D L
Sbjct: 800 LGNPESNNSSNSFK-PSHPSQSFLVNESLDFSSNPKEPPFLPWSEALLNMDMQL 852
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,352,243
Number of Sequences: 5004
Number of extensions: 76736
Number of successful extensions: 220
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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