Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1409
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 103 3e-23
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 72 9e-14
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 61 1e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 50 2e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 49 5e-07
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 47 3e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 47 3e-06
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 47 3e-06
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 46 5e-06
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 42 1e-04
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 41 2e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 41 2e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 40 3e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 3e-04
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 40 4e-04
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 36 0.004
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 36 0.005
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 35 0.012
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 26 4.2
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 25 9.8
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 25 9.8
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 103 bits (246), Expect = 3e-23
Identities = 57/116 (49%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Frame = +1
Query: 253 SDEQDTKEDDSEKKSNNDLPGSSLCLGILSD-QKFTALEGTVCEPTLLGIKDMGFITMTE 429
S E +++E D+E + +L SD +KF+ L+ + E IK+MGF TMTE
Sbjct: 57 SVESESEELDNENEDERVQKSVNLNASSTSDIEKFSDLQ--LSENIQKAIKEMGFETMTE 114
Query: 430 IQAKAIPPLLEGXDLVGAAKTGSGKTQHS*YPAIDLIYKLKFXPRNGTGVIILXPT 597
IQ ++IPPLL G D++GAAKTGSGKT P I+++Y LKF PRNGTGVII+ PT
Sbjct: 115 IQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPT 170
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/63 (36%), Positives = 30/63 (47%)
Frame = +3
Query: 477 GCCQNWLWKNTAFLIPGYRPYIQIKIXTKKWYWSHHFXTHRELSMQTFGVLMELMKYHHH 656
G + K AFLIP +K + REL++Q FGV EL+KYHH
Sbjct: 131 GAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQ 190
Query: 657 TYG 665
T+G
Sbjct: 191 TFG 193
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 71.7 bits (168), Expect = 9e-14
Identities = 33/73 (45%), Positives = 49/73 (67%)
Frame = +1
Query: 379 EPTLLGIKDMGFITMTEIQAKAIPPLLEGXDLVGAAKTGSGKTQHS*YPAIDLIYKLKFX 558
+PT +K+ FIT+TEIQ + IP L+G D++GAAKTGSGKT P I+ +Y+ K+
Sbjct: 48 QPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWT 107
Query: 559 PRNGTGVIILXPT 597
+G G +++ PT
Sbjct: 108 SLDGLGALVISPT 120
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 61.3 bits (142), Expect = 1e-10
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Frame = +1
Query: 265 DTKEDDSE-KKSNNDLPGSSLCLGILSDQKFTALEGTVCEPTLLGIKDMGFITMTEIQAK 441
D++ED+ E K N +++ + + P L G+ ++GF T+IQ K
Sbjct: 229 DSEEDEEEIAKKNAFFAEGDKEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDK 288
Query: 442 AIPPLLEGXDLVGAAKTGSGKTQHS*YPAID-LIYKLKFXPRNGTGVIILXPTE--SYQC 612
IP L G D+VGAA TGSGKT P ++ L+Y+ K P T V+IL PT + QC
Sbjct: 289 TIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPT--TRVLILCPTRELAMQC 346
Query: 613 KHLA 624
+A
Sbjct: 347 HSVA 350
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 50.4 bits (115), Expect = 2e-07
Identities = 39/113 (34%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Frame = +1
Query: 259 EQDTKEDDSEKKSNNDLPGSSLCLGILSDQKFTALEGTVCEPTLL-GIKDMGFITMTEIQ 435
E + EDD ++ L + G + K + + TLL I GF T IQ
Sbjct: 37 ENVSDEDDGNYIASKLLESNRRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQ 96
Query: 436 AKAIPPLLEGXDLVGAAKTGSGKTQHS*YPAIDLIYKLKFXPRNGTGVIILXP 594
K IP LLEG D+VG A+TGSGKT P I+ + + T +IL P
Sbjct: 97 RKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE--HLKSTLANSNTRALILSP 147
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 49.2 bits (112), Expect = 5e-07
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +1
Query: 424 TEIQAKAIPPLLEGXDLVGAAKTGSGKTQHS*YPAIDLIYKLKFXPRNGTGV--IILXPT 597
T +Q++ IP LEG DLV A+TGSGKT P ++L+ K K N G+ ++L PT
Sbjct: 38 TSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPT 97
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 46.8 bits (106), Expect = 3e-06
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = +1
Query: 385 TLLGIKDMGFITMTEIQAKAIPPLLEGXDLVGAAKTGSGKT 507
T+ I +G+ T IQA+AIP + G D++G AKTGSGKT
Sbjct: 429 TISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKT 469
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 46.8 bits (106), Expect = 3e-06
Identities = 27/63 (42%), Positives = 34/63 (53%)
Frame = +1
Query: 409 GFITMTEIQAKAIPPLLEGXDLVGAAKTGSGKTQHS*YPAIDLIYKLKFXPRNGTGVIIL 588
GF MT +QA AIP L+ DLV A TGSGKT P D + + + G G +I+
Sbjct: 20 GFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTR-RDTDETGLGALIV 78
Query: 589 XPT 597
PT
Sbjct: 79 APT 81
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 46.8 bits (106), Expect = 3e-06
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +1
Query: 397 IKDMGFITMTEIQAKAIPPLLEGXDLVGAAKTGSGKTQHS*YPAI-DLIYKLKFXPRNGT 573
+K +GF T IQ +A P + G D+VG + TGSGKT PAI + + P +G
Sbjct: 137 VKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGP 196
Query: 574 GVIILXPT 597
V++L PT
Sbjct: 197 IVLVLAPT 204
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 46.0 bits (104), Expect = 5e-06
Identities = 30/97 (30%), Positives = 50/97 (51%)
Frame = +1
Query: 253 SDEQDTKEDDSEKKSNNDLPGSSLCLGILSDQKFTALEGTVCEPTLLGIKDMGFITMTEI 432
S + + E+++ NN+ P + LG++ + +CE + +GF T T I
Sbjct: 26 SSSEKSSENNNGDSQNNEAPKTFKELGVIDE---------LCE----ACEKLGFKTPTPI 72
Query: 433 QAKAIPPLLEGXDLVGAAKTGSGKTQHS*YPAIDLIY 543
Q +AIP +L D++G A+TGSGKT P I ++
Sbjct: 73 QQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELW 109
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/51 (45%), Positives = 30/51 (58%)
Frame = +1
Query: 397 IKDMGFITMTEIQAKAIPPLLEGXDLVGAAKTGSGKTQHS*YPAIDLIYKL 549
+K + + + IQ AIP LL+ DL+G A+TGSGKT P I I KL
Sbjct: 264 LKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKL 314
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/67 (38%), Positives = 36/67 (53%)
Frame = +1
Query: 397 IKDMGFITMTEIQAKAIPPLLEGXDLVGAAKTGSGKTQHS*YPAIDLIYKLKFXPRNGTG 576
+K + T+IQ I +LEG + +G AKTGSGKT A+ +I K P +G
Sbjct: 22 LKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAF---ALPIIEKWSKDP-SGIF 77
Query: 577 VIILXPT 597
+IL PT
Sbjct: 78 ALILTPT 84
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +1
Query: 388 LLGIKDMGFITMTEIQAKAIPPLLEGXDLVGAAKTGSGKTQHS*YPAIDLIY 543
L IK G+ T +Q +IP + G DL+ A+TGSGKT +P + L +
Sbjct: 181 LQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAF 232
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 39.9 bits (89), Expect = 3e-04
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +1
Query: 388 LLGIKDMGFITMTEIQAKAIPPLLEGXDLVGAAKTGSGKTQHS*YPAIDLI 540
L+GI + GF + IQ ++IP L G D++ AK G+GKT P+++ +
Sbjct: 56 LMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKV 106
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 39.9 bits (89), Expect = 3e-04
Identities = 28/78 (35%), Positives = 37/78 (47%)
Frame = +1
Query: 364 EGTVCEPTLLGIKDMGFITMTEIQAKAIPPLLEGXDLVGAAKTGSGKTQHS*YPAIDLIY 543
EG +CE +K T IQ AIP + DL+ A TGSGKT +P ++
Sbjct: 54 EGILCE----NLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFP---ILQ 106
Query: 544 KLKFXPRNGTGVIILXPT 597
KL+ G II+ PT
Sbjct: 107 KLQLHVPGGYRAIIVAPT 124
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 39.5 bits (88), Expect = 4e-04
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +1
Query: 424 TEIQAKAIPPLLEGXDLVGAAKTGSGKTQHS*YPAIDLIYKLKFXPRNGTGVIILXPT 597
T IQA P LL G D+VG A+TGSGKT PA+ + L ++ V+++ PT
Sbjct: 189 TPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLS-DNKSVPRVLVVSPT 245
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 36.3 bits (80), Expect = 0.004
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 277 DDSEKKSNNDLPGSSLCLGILSDQKFTALEGTVCEPTLL-GIKDMGFITMTEIQAKAIPP 453
D +E +D GS + GI S T + +P LL I D GF +E+Q IP
Sbjct: 31 DTAENGEKSDKKGSYV--GIHS----TGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQ 84
Query: 454 LLEGXDLVGAAKTGSGKT 507
+ G D++ AK+G GKT
Sbjct: 85 SILGTDVLCQAKSGMGKT 102
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 35.9 bits (79), Expect = 0.005
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 382 PTLLG-IKDMGFITMTEIQAKAIPPLLEGXDLVGAAKTGSGKT 507
P +LG + GF IQ+ IP G D++G A TGSGKT
Sbjct: 131 PEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKT 173
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 34.7 bits (76), Expect = 0.012
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 343 DQKFTALEGTVCEPTLL-GIKDMGFITMTEIQAKAIPPLLEGXDLVGAAKTGSGKT 507
D+ + +P LL GI GF + IQ +AI P+L D++ A++G+GKT
Sbjct: 15 DEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKT 70
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 271 KEDDSEKKSNNDLPGSSLCLGILSDQKFTALEGTVCEPT 387
++DD E++ LP SL L ++ + +E V EPT
Sbjct: 130 EQDDLEREEMQILPTDSLLLAARTEDNLSHVEVYVYEPT 168
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 80 EPEKDIEALNNEKEAKKRVVQDGDTNG 160
E + I ALNNEK +K+ +++ G+ G
Sbjct: 657 ETGRFINALNNEKWSKQVILRKGEVYG 683
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 409 GFITMTEIQAKAIPP 453
G I+MTE+Q K +PP
Sbjct: 54 GLISMTELQQKNVPP 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,985
Number of Sequences: 5004
Number of extensions: 36691
Number of successful extensions: 120
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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