Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1405
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0034 + 18507023-18507243,18507347-18507473,18508463-185085...    31   0.90 
09_04_0075 - 14340458-14340551,14340643-14340814,14340895-143410...    31   0.90 
11_06_0003 - 19155407-19155953,19156114-19156148                       30   1.6  
07_01_0779 + 6020009-6020174,6022307-6022428,6022853-6022962,602...    29   3.6  
02_04_0090 - 19643182-19643322,19644192-19644335,19644563-196446...    28   4.8  
10_01_0129 + 1535823-1537196                                           27   8.4  
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936...    27   8.4  

>11_05_0034 +
           18507023-18507243,18507347-18507473,18508463-18508531,
           18508620-18508763
          Length = 186

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 18/33 (54%), Positives = 18/33 (54%)
 Frame = -3

Query: 256 HLRDALPPPPQTRRRGE*CCPRARSSPVHSPLS 158
           HLR ALP PP   R G    P A SSP H  LS
Sbjct: 15  HLRRALPSPP---RAGALLLPAAASSPAHRFLS 44


>09_04_0075 -
           14340458-14340551,14340643-14340814,14340895-14341066,
           14341617-14341811,14341886-14342053,14342150-14342335,
           14342797-14342881,14342896-14343206,14344222-14344569
          Length = 576

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
 Frame = +1

Query: 28  EFMPWLVKEVSLEIESIITSRDVITEIVRDVVEARGELY-RNVAEREE--NEQGRNEPED 198
           EFM WL+  +  +++S   +R +I +  +  +E   E + +++ E++E  +EQ  +   D
Sbjct: 338 EFMSWLLNTMHSKLKSRKRNRSIIHDCFQGELEVVKEFHKKHIVEKKEDGDEQNGDAGSD 397

Query: 199 SITHPSAV 222
            +T  S V
Sbjct: 398 IVTETSRV 405


>11_06_0003 - 19155407-19155953,19156114-19156148
          Length = 193

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
 Frame = +1

Query: 40  WLVKEVSLEIESI--------ITSRDVITEI-VRDVVEARGELYRNVAEREENEQGRNEP 192
           W+ +E+S  IES         I S+ V  ++ VRD V +R E +  VAE EE E+   E 
Sbjct: 6   WIYREISY-IESYTNWSHHGEIPSKQVPNQVTVRDEVVSRDEDFMVVAEEEEEEEEEEEE 64

Query: 193 ED 198
           E+
Sbjct: 65  EE 66


>07_01_0779 +
           6020009-6020174,6022307-6022428,6022853-6022962,
           6024342-6024395,6026977-6027096,6027790-6029347
          Length = 709

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 268 ATSCHLRDALPPPPQTRRRGE*CCPRARSSPV 173
           ATSC  RD  PPPP + ++      R RS P+
Sbjct: 604 ATSCLPRDDPPPPPTSAKKAGFLRRRRRSPPL 635


>02_04_0090 -
           19643182-19643322,19644192-19644335,19644563-19644626,
           19644710-19644796,19645371-19645513,19645706-19645771,
           19645954-19646046,19646165-19646230,19646363-19646433,
           19646882-19646982,19647217-19647317,19647421-19647528,
           19647639-19648064
          Length = 536

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/34 (47%), Positives = 16/34 (47%)
 Frame = -3

Query: 262 SCHLRDALPPPPQTRRRGE*CCPRARSSPVHSPL 161
           S HLR A PPPP  R R     P    SP H  L
Sbjct: 8   SLHLRLAPPPPPHRRGRPPRHAPFLPLSPYHHHL 41


>10_01_0129 + 1535823-1537196
          Length = 457

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 247 DALPPPPQTRRRGE 206
           D  PPPP+ RRRGE
Sbjct: 64  DGQPPPPRRRRRGE 77


>04_04_0959 +
           29692740-29693035,29693102-29693267,29693433-29693612,
           29693703-29693771,29693888-29694088,29694187-29694240,
           29694325-29694386,29694488-29694620,29694789-29694899,
           29695008-29695104,29695638-29695714,29696129-29696194,
           29696431-29696583,29697392-29697447,29697524-29697584,
           29697656-29697766,29698010-29698144,29698217-29698447,
           29699001-29699075,29699161-29699282,29699381-29699453,
           29699538-29699642,29699728-29699895,29700079-29700148,
           29700224-29700375,29700574-29700651,29700744-29700836,
           29700961-29701098,29701237-29701276,29701350-29701423,
           29701777-29701911,29702345-29702464,29702778-29702939
          Length = 1287

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +2

Query: 152 LLRERRMNRGGTSPRTASLTPPPCLRRGRKSISKMTRR 265
           LL ER+   G   P  AS   P CLRR R+S  +  RR
Sbjct: 43  LLPERQAPEG-RRPLAASRCLPTCLRRHRRSSRRSHRR 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,468,037
Number of Sequences: 37544
Number of extensions: 245952
Number of successful extensions: 871
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)