Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1401
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.60 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.60 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   5.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 266 ASVTSWQGIRTRCRKCSFLCVICFISQL 183
           A+V  W  +  R RK  F+ ++CF+S L
Sbjct: 402 AAVDEWPRL-LRKRKELFIAIVCFVSYL 428


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 266 ASVTSWQGIRTRCRKCSFLCVICFISQL 183
           A+V  W  +  R RK  F+ ++CF+S L
Sbjct: 455 AAVDEWPRL-LRKRKELFIAIVCFVSYL 481


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 233 RCRKCSFLCV 204
           +C KCS+ CV
Sbjct: 18  KCEKCSYSCV 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,925
Number of Sequences: 438
Number of extensions: 1330
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)