Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1395
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...   134   1e-32
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    93   3e-20
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.3  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   3.0  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   5.3  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   7.0  
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe...    25   7.0  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   9.2  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    25   9.2  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   9.2  

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score =  134 bits (324), Expect = 1e-32
 Identities = 65/103 (63%), Positives = 75/103 (72%)
 Frame = +2

Query: 257 LTLSEKILYSHLDDPKGQEIERGASYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPS 436
           LT SEKILY HLDDP  Q+IERG SYL+LRPDRVA QDATAQMA+LQF+S+G+P VAVP 
Sbjct: 59  LTYSEKILYGHLDDPVNQDIERGVSYLKLRPDRVACQDATAQMAILQFMSAGMPEVAVPV 118

Query: 437 TIHCDHLIEAQVGGEKDLARAKDLTKKYTSF*RLPELNMEVGF 565
           T+HCDHLIEA  GG  DL RA    K+   F +       +GF
Sbjct: 119 TVHCDHLIEAYEGGPIDLERANVTNKEVYDFLQTACAKYNIGF 161



 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 8/181 (4%)
 Frame = +3

Query: 105 VLSEIQQRCFSVSPLTAA--AAQVAMSKFDKVP-LPYEKLTKNLEVVKKRLGRN*PCLRK 275
           + ++   R FS +P+ A   A +VAMS F+K   + Y+++  NLE+VKKRL R      K
Sbjct: 5   IFTQSTLRSFSCAPVAANIDAKKVAMSNFEKNKFINYQRIKDNLEIVKKRLNRPLTYSEK 64

Query: 276 SYILTWMTPKDRKLNAAQVISACVPTVWPCKTPLHKW---QCYNLSLP--AFPV*LYRPP 440
                   P ++ +          P    C+    +    Q  +  +P  A PV ++   
Sbjct: 65  ILYGHLDDPVNQDIERGVSYLKLRPDRVACQDATAQMAILQFMSAGMPEVAVPVTVHCDH 124

Query: 441 FIVIT*SKPKSEARRIWPGLRTSQRSIQVFRDCRSXIWKSXFWKARFGIXHQIILENYAF 620
            I      P    R        + + +  F       +   FW+   GI HQI+LENYAF
Sbjct: 125 LIEAYEGGPIDLER-----ANVTNKEVYDFLQTACAKYNIGFWRPGSGIIHQIVLENYAF 179

Query: 621 P 623
           P
Sbjct: 180 P 180


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 93.1 bits (221), Expect = 3e-20
 Identities = 45/85 (52%), Positives = 60/85 (70%), Gaps = 6/85 (7%)
 Frame = +2

Query: 254 KLTLSEKILYSHLDDPK------GQEIERGASYLRLRPDRVAMQDATAQMAMLQFISSGL 415
           KLTL+EK+LYSHL +P+           RG+ YL+L PDRVAMQDA+AQMA+LQF++ GL
Sbjct: 56  KLTLAEKVLYSHLVNPEESFSGVSPSDIRGSLYLKLNPDRVAMQDASAQMALLQFMTCGL 115

Query: 416 PRVAVPSTIHCDHLIEAQVGGEKDL 490
            +  +P++IHCDHLI    G   D+
Sbjct: 116 EKTMIPASIHCDHLIVGHRGANSDI 140



 Score = 32.3 bits (70), Expect = 0.061
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +3

Query: 564 FWKARFGIXHQIILENYAFP 623
           FW    GI HQI+LENYA P
Sbjct: 165 FWGPGSGIIHQIVLENYAAP 184


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 101  GGTL*NPTKMFQRISIDRRRGPGGDVQVRQGTLA 202
            GG++ N  +   ++ ID  R PG ++ V QG+ A
Sbjct: 1226 GGSIINKIRKIAQVKIDVPRTPGDEIVVVQGSRA 1259


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 265  QGQFLPSLFLTTSKFFVNFS*GKGTLSNLDIATWAA 158
            Q QF  +++ T +  FV    G G     ++ATW A
Sbjct: 1139 QTQFFHTIYHTDTNIFVGAPTGSGKTMAAELATWRA 1174


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 177 SKFDKVPLPYEKLTKNLEVVKKR 245
           +KFD+V +PY+ +  ++E   KR
Sbjct: 396 AKFDEVDMPYDTIWLDIEYASKR 418


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 535 SLKTCILLCEVLSPGQILLASDLGFDQVITMN 440
           SLK C++ CEV+ P   ++ SD     + T N
Sbjct: 395 SLKLCMVECEVVDPEFNIIVSDRWLQPLGTNN 426


>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 519 IQVFRDCRSXIWKSXFWKARFGIXHQIILENY 614
           +Q++R+ R   WK    KA+FG  + I    Y
Sbjct: 66  LQMYRNKRMQEWKDQMSKAKFGSVYPISKPEY 97


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 544 LRQSLKTCILLCEVLSPGQILLASDLGFDQ 455
           L+ +LK    L   L PG+  +  +L FDQ
Sbjct: 556 LQNNLKELASLVNFLMPGKFYIRDELNFDQ 585


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 133 KHLCWISESTTLVLLPWPCKTLIQCAMVAGLQYIKRINLEKF 8
           ++ CWIS   TL+LL     T +Q   +  L  I RI    F
Sbjct: 320 QYKCWISRDVTLILL-----TALQLVNIYWLILILRIGYRAF 356


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 473 RLGLRSSDHNEWWTVQLHGEGRKR*IVTLPFVQWRLAWPHGRD 345
           RLG   + H   +  +L  E  K  ++T P V +R+ + +GR+
Sbjct: 391 RLGFLGTLHLSVFIDRLKDEYGKELLITSPTVPYRIKYKNGRE 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,155
Number of Sequences: 5004
Number of extensions: 51005
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)