Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1392
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0074 + 12215414-12215603,12216178-12216236,12216605-122167...    27   6.3  

>01_03_0074 +
           12215414-12215603,12216178-12216236,12216605-12216703,
           12216820-12216946,12216989-12217252,12217382-12217503,
           12217575-12217646
          Length = 310

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 281 KKNCLHYSQCYNSMGIAXPIKQVPTQKTYNY 373
           +KN +HY  CYN      P  + PT  T NY
Sbjct: 153 QKN-MHYESCYNEHSNKQPKLKEPTLLTANY 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,465,866
Number of Sequences: 37544
Number of extensions: 94302
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)