Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1391
         (313 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0816 - 6171189-6171255,6171277-6171441,6172037-6172618,617...    29   0.77 
12_02_1060 - 25752181-25754229                                         26   7.2  
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10...    25   9.5  
11_03_0128 - 10437407-10438049,10438097-10438272                       25   9.5  
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11...    25   9.5  

>06_01_0816 -
           6171189-6171255,6171277-6171441,6172037-6172618,
           6173451-6173761
          Length = 374

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 76  GLVVLGPEDWSEISVLNWSQKIS 8
           G VV GP  W EI +  WSQ+ S
Sbjct: 42  GRVVAGPYCWQEIDIQEWSQQQS 64


>12_02_1060 - 25752181-25754229
          Length = 682

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 250 LWPFEVTLSPFPSDAP 297
           LWP ++TL P PS  P
Sbjct: 252 LWPIDITLPPPPSPPP 267


>12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-106310,
            106787-106825,107026-107109,107193-107241,107331-107422,
            107680-107809,107906-107982,108058-109676,110024-110221,
            110287-110825
          Length = 1109

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 31   IPKFHSSLQDLKQPSLQEPR 90
            IP+ H SL    Q SLQ+PR
Sbjct: 1037 IPQNHGSLSSYTQMSLQQPR 1056


>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 162 SXTCRTARRAYSKARMACDTGGKAS 88
           S TCRT  RA   +   C TG + S
Sbjct: 140 STTCRTCCRATPNSTSPCKTGSRCS 164


>11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-110394,
            110491-110603,111080-111118,111319-111402,111486-111534,
            111624-111715,111999-112128,112225-112301,112377-113995,
            114348-114545,114635-115173
          Length = 1166

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 31   IPKFHSSLQDLKQPSLQEPR 90
            IP+ H SL    Q SLQ+PR
Sbjct: 1094 IPQNHGSLSSYTQMSLQQPR 1113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,105,657
Number of Sequences: 37544
Number of extensions: 86800
Number of successful extensions: 238
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)