Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1387
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.33 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               25   0.44 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.4  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 64  YVNDNKVNLQNRY*NYYITTVKINTFHF 147
           Y+N +  NL+N+  NY+I  + +NT++F
Sbjct: 209 YLNHD-YNLENKL-NYFIEDIGLNTYYF 234


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 265 EN*GREEIIXALKEENERLLGKIRCVE 185
           EN   ++I   L++E+ER+L K  C+E
Sbjct: 31  ENLNLDDIDSLLEDESERMLRKRGCIE 57


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 494 SHLVDPRAISEKLWTXSALXWLRS 423
           SH VD   + + +W  S L W  S
Sbjct: 77  SHTVDFHVMLKLMWEQSHLTWKSS 100


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 162 SSVAVPEFSTHRILP 206
           +SV  P FS H++ P
Sbjct: 29  ASVEQPSFSVHQVYP 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,751
Number of Sequences: 438
Number of extensions: 1779
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)