Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1386
(528 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 139 3e-34
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 82 6e-17
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 81 1e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 58 8e-10
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 29 0.57
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 28 0.99
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 26 3.0
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 4.0
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 9.2
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 9.2
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 9.2
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 9.2
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 9.2
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 9.2
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 9.2
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 9.2
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 9.2
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 9.2
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 9.2
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 139 bits (336), Expect = 3e-34
Identities = 64/106 (60%), Positives = 80/106 (75%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
M+G+TT RFPG+LN+DLRKLAVNMVPFPRLHF+ GFAPL + G+ ++A++VPELT Q
Sbjct: 233 MAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQ 292
Query: 184 MFDAKNMMVACDPRHGRYLTVXTISGGECX*KKLTSNWRIFXTKTA 321
MFDA NMMVA DPRHGRYLTV + G+ K++ R TK +
Sbjct: 293 MFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNS 338
Score = 125 bits (302), Expect = 4e-30
Identities = 53/83 (63%), Positives = 68/83 (81%)
Frame = +3
Query: 261 GRMXMKEVDEQLANIXNKNSTXFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTXIQTIF 440
G++ MKEVDEQ+ ++ KNS FVEWIP+N AVC +PP+ LKM++TFIGN+T IQ IF
Sbjct: 319 GKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIF 378
Query: 441 KRVSEQFAAMFMRKAFLHWYTGE 509
+R+ +QF+AMF RKAFLHWYTGE
Sbjct: 379 RRLGDQFSAMFRRKAFLHWYTGE 401
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 81.8 bits (193), Expect = 6e-17
Identities = 37/88 (42%), Positives = 52/88 (59%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S IT LRF G LN DL + N+VP+PR+HF +AP+ S + + +V E+T Q
Sbjct: 235 VSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQ 294
Query: 184 MFDAKNMMVACDPRHGRYLTVXTISGGE 267
F+ N MV CDPR GRY+ + G+
Sbjct: 295 CFEPYNQMVKCDPRAGRYMATCLLYRGD 322
Score = 62.1 bits (144), Expect = 5e-11
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Frame = +3
Query: 261 GRMXMKEVDEQLANIXNKNSTXFVEWIPNNCKIAVCDIPPRGLK--------MASTFIGN 416
G + ++V + I K + FV+W P KI +CD PP+ ++ A + N
Sbjct: 321 GDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSN 380
Query: 417 TTXIQTIFKRVSEQFAAMFMRKAFLHWYTGE 509
TT I + R+ +F M+ ++AF+HWY GE
Sbjct: 381 TTSIAEAWSRLDHKFDLMYSKRAFVHWYVGE 411
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 81.0 bits (191), Expect = 1e-16
Identities = 36/88 (40%), Positives = 52/88 (59%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S IT LRF G LN DL + N+VP+PR+HF ++P+ S + + +V E+T Q
Sbjct: 239 VSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQ 298
Query: 184 MFDAKNMMVACDPRHGRYLTVXTISGGE 267
F+ N MV CDPR GRY+ + G+
Sbjct: 299 CFEPYNQMVKCDPRTGRYMATCLLYRGD 326
Score = 58.0 bits (134), Expect = 8e-10
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Frame = +3
Query: 261 GRMXMKEVDEQLANIXNKNSTXFVEWIPNNCKIAVCDIPPRGL--------KMASTFIGN 416
G + ++V + +I ++ + FV+W P KI +C PP+ + A + N
Sbjct: 325 GDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSN 384
Query: 417 TTXIQTIFKRVSEQFAAMFMRKAFLHWYTGE 509
TT I + R+ +F M+ ++AF+HWY GE
Sbjct: 385 TTSIAEAWSRLDHKFDLMYSKRAFVHWYVGE 415
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 58.0 bits (134), Expect = 8e-10
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRAL---TVPEL 174
MS TT LR+PG +N DL + +++P PR HF + P T++ ++ +A+ TV ++
Sbjct: 236 MSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDV 295
Query: 175 TLQMFDAKNMMVACDP-RHGRYLTVXTISGGE 267
++ KN MV+ +P + ++++ I GE
Sbjct: 296 MRRLLLPKNQMVSVNPSKKSCFISILDIIQGE 327
Score = 39.1 bits (87), Expect = 4e-04
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 GRMXMKEVDEQLANIXNKNSTXFVEWIPNNCKIAVCDIPP---RGLKMASTFIGNTTXIQ 431
G +V + L I + F+ W P + ++A+ P +++ + N T I
Sbjct: 326 GEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIA 385
Query: 432 TIFKRVSEQFAAMFMRKAFLHWYTGE 509
++FKR +Q+ + R AFL Y E
Sbjct: 386 SLFKRTLDQYDRLRKRNAFLEQYKKE 411
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 28.7 bits (61), Expect = 0.57
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 301 FASCSSTSFIXIRPLKSSQRSNTSRVEDHTRPSCFWRRTFAASARVQL 158
F+ C T I P+ N + + D ++ FW++ F ASA V L
Sbjct: 25 FSKCHRTVTTKILPIVEKYAKNCNTIWDSSK---FWKQFFEASANVSL 69
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 27.9 bits (59), Expect = 0.99
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 106 TPGFAPLTSRGAQQYRALTVPELTLQMFDAKNMMVACDPRHGRYLTVXTISGGEC 270
TP A ++ Y A+++ +L + M + +GRYL SGG C
Sbjct: 446 TPILAVASNSIVSMYNAISLQQLAVFMRHTAPVSALSFSHNGRYLATGDTSGGVC 500
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 401 YLHW*HDGHTDHIQEGVXAVRGYVY 475
+LH H HT I EG+ A+R +Y
Sbjct: 297 FLHTFHHEHTFTIDEGLDALRDVIY 321
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 408 IGNTTXIQTIFKRVSEQFAAMFMRKAFLHWY 500
+ N + T++K + E+F+ +F+RK L WY
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWY 1732
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,077,801
Number of Sequences: 5004
Number of extensions: 36288
Number of successful extensions: 126
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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