Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1380
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   114   4e-26
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    28   3.3  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    27   7.6  
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    27   10.0 
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    27   10.0 
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    27   10.0 
AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical ...    27   10.0 
AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  114 bits (274), Expect = 4e-26
 Identities = 50/56 (89%), Positives = 51/56 (91%)
 Frame = +2

Query: 254 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVN 421
           Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWHR VN
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVN 115



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = +3

Query: 81  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 251
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAG 58


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +1

Query: 253 TNQC--RIMGYRTCCCPNSAC 309
           TN+C  +  G+ TCCC + AC
Sbjct: 867 TNRCHQQEQGFETCCCDSDAC 887


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +1

Query: 253 TNQC--RIMGYRTCCCPNSAC 309
           TN+C  +  G+ TCCC + AC
Sbjct: 867 TNRCHQQEQGFETCCCDSDAC 887


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 129 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 28
           P  S +S N PT+K+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 368 HHDTCYRRHPDRTYGYHHHGHAEFGQQH 285
           HHD  +++H  + +  HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 369 PPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 271
           PP    P AP P +++PPP   G     R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 369 PPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 271
           PP    P AP P +++PPP   G     R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -3

Query: 335  RTYGYHHHGHAEFGQQHVRYPMIRHWFVTSLLAHAVGLPRVLGHRNVNIIDQVRTYGRLE 156
            R  GY+      +     RYP +R    + L + A  LPR++  R+ + +   R + R  
Sbjct: 1376 RPEGYYEPPVQTYSPVPPRYPTLRRVDDSPLRSRAKSLPRIISPRHEHFVR--RPHSRNS 1433

Query: 155  YERE 144
            Y  E
Sbjct: 1434 YSNE 1437


>U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical
           protein F54H5.5 protein.
          Length = 662

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 299 FGQQHVRYPMIRHWFVTSLLAHAV--GLPRVLGHRNVNIID 183
           F  + V  P+   WFVTSL+  AV   +   + H  V ++D
Sbjct: 386 FSPETVEDPVTNGWFVTSLIREAVEENIKEAICHILVQLLD 426


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +3

Query: 66  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 239
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 172 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 59
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 172 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 59
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 299 IPRVRGGGTHRSGQGAFGNMCRGG 370
           +P   GGG   S Q A GN C GG
Sbjct: 26  LPGAGGGGCCSSAQPACGNPCGGG 49


>AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical
           protein M01B12.4b protein.
          Length = 644

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 181 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 68
           R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 568 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607


>AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical
           protein M01B12.4a protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 181 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 68
           R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 558 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,644,035
Number of Sequences: 27780
Number of extensions: 232688
Number of successful extensions: 802
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)