Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1378
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0100 - 31647506-31647664,31647752-31647835,31647933-316480...    29   2.1  
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056...    27   8.6  
01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646     27   8.6  

>03_06_0100 -
           31647506-31647664,31647752-31647835,31647933-31648089,
           31648181-31648446,31648524-31648796,31648874-31648985,
           31649112-31649331,31649476-31649899
          Length = 564

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +1

Query: 166 EALPKGHPKRGYVRVVVSAIPGVSQRXLGSGDDEIISGIADTKISKSIXETAALNVI 336
           EA+P G  K     V   A P VSQR  G G +    G  + K+++   E AAL ++
Sbjct: 56  EAIPAGTGKAKKQVVFFDAAPPVSQRGGGGGGEGEGEGEGEGKVARR-KENAALGLV 111


>07_03_1710 -
           28903614-28903673,28904982-28905146,28905453-28905638,
           28905784-28905927,28906281-28906460,28906559-28907215
          Length = 463

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +2

Query: 62  ECFKLYVIMENHEPEHDKGLLSDTF-WRTPQRAVPGRPYQRVIPNEVMSGSSYQQFQASV 238
           E ++ +    +H    D  +L  ++  + P   VP  P++ + P+  M    YQ      
Sbjct: 324 EYYESFSTYNHHNSNDDSDMLGHSYDIQLPDEHVPDEPFEPIKPSWAMHSGYYQSCTDGA 383

Query: 239 NDXWDPATTRSS 274
           +  ++  T  SS
Sbjct: 384 SAEFENHTLSSS 395


>01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646
          Length = 378

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = +3

Query: 81  LLWKITNPNMTRVCCLTRSGGHLSALYRGGLTKGSSQTRLCPGRRISNSRRQSTTPGIRR 260
           L+ K     + R+  L R      A  R    K   Q R+     +  +R ++TTPG RR
Sbjct: 126 LVRKQAATTLHRLQALMRQQASSRAATRASYRKSMEQERIS----VEETRLKTTTPGHRR 181

Query: 261 RRDHLGDSGH 290
           R     DS +
Sbjct: 182 RLSDSADSNY 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,627,354
Number of Sequences: 37544
Number of extensions: 238915
Number of successful extensions: 643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)