Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1376
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    26   2.9  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   5.0  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   5.0  

>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 23  PCNYVYKVFILNTILLFFRTLSCXY 97
           P  +  ++ I+NTI++ F T+ C Y
Sbjct: 30  PLTWPIRIRIINTIIISFMTMLCMY 54


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 149 NQSYWFVLREDQSNVILSXNXYVNQNPQIPLQ 244
           N+S W +  +++  +I + N Y+  NP  P+Q
Sbjct: 306 NRSPWTI--QEKEKLIKTVNQYLQSNPSSPIQ 335


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 170 LREDQSNVILSXNXYVNQNPQIPL 241
           L+ED  +V      YVNQN  IP+
Sbjct: 336 LKEDHPDVFEKLKEYVNQNKFIPI 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,617,496
Number of Sequences: 5004
Number of extensions: 25146
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)