Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1374
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485...    30   1.4  
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075...    29   3.2  
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489...    28   7.4  
03_06_0162 - 32099985-32101130,32101844-32102498,32102509-32102693     27   9.7  

>04_03_0658 +
           18447986-18448117,18448204-18448317,18448388-18448507,
           18448589-18449215,18449289-18449462,18449545-18449809,
           18449889-18449959,18450043-18450145,18450221-18450280,
           18450533-18450744,18450830-18450901,18451446-18451502,
           18451598-18451882,18452359-18452371,18452396-18452463,
           18452649-18452747,18452836-18452967,18453038-18453141,
           18453234-18453423,18453519-18453524
          Length = 967

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 231 DSNGIRLLDKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQIIDAKKGKN 377
           D+N    +DK S  C   D++ DE  D+T  + P DN    ID  +  N
Sbjct: 467 DTNLSSEVDKLSKSCNPTDQNNDEKNDVTSAHSPKDNMDNDIDDNRNAN 515


>04_04_0859 +
           28805836-28805842,28806405-28806492,28807474-28807558,
           28807638-28807763,28807819-28807968,28808497-28808541,
           28808612-28808875,28809843-28809887,28810395-28810430,
           28812048-28812816,28813063-28813925,28814024-28814182,
           28814440-28814558,28815356-28815417,28816677-28816805,
           28817395-28817460,28817757-28817890,28818025-28818162,
           28818630-28818889,28818996-28819107,28819590-28819675,
           28820655-28820735,28822841-28822928,28823222-28823260,
           28823847-28823964,28824063-28824130,28824884-28824981,
           28825238-28825397,28825691-28825816,28825876-28825945,
           28826046-28826449
          Length = 1664

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/108 (17%), Positives = 49/108 (45%)
 Frame = +3

Query: 261 YSFLCEMYDEDADEIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVQLPPLNLDMLQIGNIV 440
           Y  + ++Y + +D+    + + +       II +K+  N  + + +    +++ +IG  +
Sbjct: 277 YKRMVDLYSKKSDDESSASTDTYGTKWLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPM 336

Query: 441 NIFSKLLYIKDCAPATRKTLFKKCKVHLP*LSPIAPSEHGKIITFIMK 584
            +   L+  +  +    +T+  KC +HL     +    +G +I F+ K
Sbjct: 337 GLALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGNLI-FVRK 383


>06_03_1450 +
           30246702-30247346,30248603-30248689,30248789-30248920,
           30249016-30249162,30250375-30250440,30250519-30250629,
           30251551-30251584,30251667-30251743,30251829-30251906
          Length = 458

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 365 LRVYYLNRIVKWKIIEG*IFYFVSILIIHFTQETIFIK-*SYT 240
           LR+Y L  + +W +++  IF F S   + F    I +K  SYT
Sbjct: 232 LRIYPLETVTRWDVLDSSIFAFWSKSSVDFEARRIRLKSNSYT 274


>03_06_0162 - 32099985-32101130,32101844-32102498,32102509-32102693
          Length = 661

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 243 IRLLDKYSFLCEMYDEDADEIKDLTLNYFPF 335
           +  LD+   +C+MYD D   I D+T+    F
Sbjct: 549 VESLDELYMVCQMYDSDMKTIYDVTVYRMDF 579


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,084,958
Number of Sequences: 37544
Number of extensions: 241386
Number of successful extensions: 509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)