Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1373
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0338 + 7426999-7428322,7428390-7428646                           28   8.7  
02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875           28   8.7  

>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 462 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 322
           LM      C  L HR P L +  L A        L+AI   KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443


>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
          Length = 356

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 171 SSCSTCKW*CTESRGRSMGRSKNRR 97
           +SC  CK  C  S GRS  R++ RR
Sbjct: 252 TSCIFCKSFCRSSGGRSRARARERR 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,846,578
Number of Sequences: 37544
Number of extensions: 249393
Number of successful extensions: 511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)