Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1372
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   116   2e-27
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   116   2e-27
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   2.0  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   3.5  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    25   8.0  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  116 bits (280), Expect = 2e-27
 Identities = 55/93 (59%), Positives = 57/93 (61%)
 Frame = +2

Query: 254 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 433
           QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH        
Sbjct: 61  QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120

Query: 434 XXXXXXXXXXXXXXXXXQARGHIIERFPSFPWV 532
                             ARGH IE  P  P V
Sbjct: 121 RYAIASAVAASGVPSLLLARGHRIEEIPEVPLV 153



 Score = 77.4 bits (182), Expect = 1e-15
 Identities = 35/62 (56%), Positives = 46/62 (74%)
 Frame = +3

Query: 72  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 251
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 252 HK 257
           H+
Sbjct: 60  HQ 61



 Score = 28.7 bits (61), Expect = 0.65
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 508 KIPELPLGVADKXQXINKTKQAV 576
           +IPE+PL V D  Q   KTK+AV
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAV 168


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  116 bits (280), Expect = 2e-27
 Identities = 55/93 (59%), Positives = 57/93 (61%)
 Frame = +2

Query: 254 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 433
           QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH        
Sbjct: 61  QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120

Query: 434 XXXXXXXXXXXXXXXXXQARGHIIERFPSFPWV 532
                             ARGH IE  P  P V
Sbjct: 121 RYAISSAVAASGVPSLLLARGHRIEEIPEVPLV 153



 Score = 78.2 bits (184), Expect = 8e-16
 Identities = 36/62 (58%), Positives = 46/62 (74%)
 Frame = +3

Query: 72  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 251
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 252 HK 257
           H+
Sbjct: 60  HQ 61



 Score = 28.7 bits (61), Expect = 0.65
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 508 KIPELPLGVADKXQXINKTKQAV 576
           +IPE+PL V D  Q   KTK+AV
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAV 168


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
 Frame = +3

Query: 75  SVARPLVSVYSEKS-ETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS---K 242
           SVA P     S  +  T   +A PL     + ++P   ND + S S +S  P   S    
Sbjct: 381 SVASPAFPNSSTSNPSTAPASASPLA----STLKPSTANDTNGSSSSSSSNPRTSSPLAS 436

Query: 243 EAGHKPVPNHGVPDVLLP 296
            A +KP      P VLLP
Sbjct: 437 NAENKPPVAQQSPPVLLP 454


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 133 APCTVSLFSEYTDTKGRATDRLISLL 56
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -1

Query: 311 GHAEFGQQHVR--YPMIRHWFV 252
           G++ F  +HV   +P ++HWFV
Sbjct: 320 GNSTFPTRHVLSYFPQVKHWFV 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,992
Number of Sequences: 5004
Number of extensions: 41007
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)