Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1372
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   116   2e-26
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    28   4.2  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    27   9.6  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  116 bits (278), Expect = 2e-26
 Identities = 55/93 (59%), Positives = 59/93 (63%)
 Frame = +2

Query: 254 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 433
           Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH        
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQK 119

Query: 434 XXXXXXXXXXXXXXXXXQARGHIIERFPSFPWV 532
                            QARGH+I++    P V
Sbjct: 120 RYAVSSAIAASGIPALLQARGHVIDQVAEVPLV 152



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = +3

Query: 81  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 251
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAG 58



 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 508 KIPELPLGVADKXQXINKTKQAV 576
           ++ E+PL V+DK +   KTK+AV
Sbjct: 145 QVAEVPLVVSDKVESFRKTKEAV 167


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +1

Query: 253 TNQC--RIMGYRTCCCPNSAC 309
           TN+C  +  G+ TCCC + AC
Sbjct: 867 TNRCHQQEQGFETCCCDSDAC 887


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +1

Query: 253 TNQC--RIMGYRTCCCPNSAC 309
           TN+C  +  G+ TCCC + AC
Sbjct: 867 TNRCHQQEQGFETCCCDSDAC 887


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 129 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 28
           P  S +S N PT+K+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 368 HHDTCYRRHPDRTYGYHHHGHAEFGQQH 285
           HHD  +++H  + +  HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 369 PPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 271
           PP    P AP P +++PPP   G     R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 369 PPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 271
           PP    P AP P +++PPP   G     R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical
           protein F54H5.5 protein.
          Length = 662

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 299 FGQQHVRYPMIRHWFVTSLLAHAV--GLPRVLGHRNVNIID 183
           F  + V  P+   WFVTSL+  AV   +   + H  V ++D
Sbjct: 386 FSPETVEDPVTNGWFVTSLIREAVEENIKEAICHILVQLLD 426


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +3

Query: 66  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 239
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,547,314
Number of Sequences: 27780
Number of extensions: 256965
Number of successful extensions: 839
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)