Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1369
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038623-1|AAB94156.1|  346|Caenorhabditis elegans Seven tm rece...    31   1.0  
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    30   1.8  
AC024750-7|AAF60436.2|  341|Caenorhabditis elegans Seven tm rece...    30   1.8  
AC024750-6|AAF60442.2|  341|Caenorhabditis elegans Seven tm rece...    30   1.8  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    30   1.8  
U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-lik...    29   3.2  
AC024750-4|AAF60438.2|  339|Caenorhabditis elegans Seven tm rece...    29   3.2  
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z73422-7|CAA97769.2|  603|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U00047-12|AAA50685.1|  332|Caenorhabditis elegans Nuclear hormon...    28   5.6  
AF025457-4|AAB70966.1|  385|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF038623-1|AAB94156.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 170 protein.
          Length = 346

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 9/24 (37%), Positives = 20/24 (83%)
 Frame = +3

Query: 615 AKFAKNLQWELYQSIASNNMLPII 686
           +KF+KNLQ +LY+++ +  ++P++
Sbjct: 241 SKFSKNLQMQLYKALVAQTLIPVL 264


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 216 KQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           K V +D +G+RLL    FLC   DED   ++ + L
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDEDRQMLESIGL 453


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 216 KQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           K V +D +G+RLL    FLC   DED   ++ + L
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDEDRQMLESIGL 453


>AC024750-7|AAF60436.2|  341|Caenorhabditis elegans Seven tm
           receptor protein 174 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 8/25 (32%), Positives = 21/25 (84%)
 Frame = +3

Query: 615 AKFAKNLQWELYQSIASNNMLPIII 689
           ++F+KNLQ +LY+++ +  ++P+++
Sbjct: 242 SEFSKNLQMQLYKALVAQTVIPVVL 266


>AC024750-6|AAF60442.2|  341|Caenorhabditis elegans Seven tm
           receptor protein 175 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 8/25 (32%), Positives = 21/25 (84%)
 Frame = +3

Query: 615 AKFAKNLQWELYQSIASNNMLPIII 689
           ++F+KNLQ +LY+++ +  ++P+++
Sbjct: 242 SEFSKNLQMQLYKALVAQTVIPVVL 266


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
           subunit Med13 protein.
          Length = 2862

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 216 KQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           K V +D +G+RLL    FLC   DED   ++ + L
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDEDRQMLESIGL 453


>U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical
           protein M03F4.7a protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 225 DIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           D DSNG   LD+  + C M+ ED D ++D+ +
Sbjct: 157 DYDSNGA--LDRTEYGCFMHPEDCDHMRDVVV 186


>AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-like
           protein protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 225 DIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           D DSNG   LD+  + C M+ ED D ++D+ +
Sbjct: 157 DYDSNGA--LDRTEYGCFMHPEDCDHMRDVVV 186


>AC024750-4|AAF60438.2|  339|Caenorhabditis elegans Seven tm
           receptor protein 173 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 8/24 (33%), Positives = 20/24 (83%)
 Frame = +3

Query: 615 AKFAKNLQWELYQSIASNNMLPII 686
           ++FA+NLQ +LY+++ +  ++P++
Sbjct: 241 SEFARNLQMQLYKALIAQTLIPVV 264


>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
 Frame = +3

Query: 294  ADEIKDLTLNYFPFDNSVQI-IDAKKGKNV---LKRVQLPPLNLDMLQIGNIVNIFSKLL 461
            ADE K +T++  P +N +QI +D+  GK V   ++ +  P  + D L I +++N  S   
Sbjct: 1023 ADEHKIVTIDSIPVENDIQIVVDSFSGKWVELSVEELTEPKESDDELSIESLLN--SAKN 1080

Query: 462  YIKDCAPATRKTLFKKCKVHL 524
            Y     P+    +F     HL
Sbjct: 1081 YFASPEPSEVINVFSLASGHL 1101


>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
 Frame = +3

Query: 294  ADEIKDLTLNYFPFDNSVQI-IDAKKGKNV---LKRVQLPPLNLDMLQIGNIVNIFSKLL 461
            ADE K +T++  P +N +QI +D+  GK V   ++ +  P  + D L I +++N  S   
Sbjct: 1023 ADEHKIVTIDSIPVENDIQIVVDSFSGKWVELSVEELTEPKESDDELSIESLLN--SAKN 1080

Query: 462  YIKDCAPATRKTLFKKCKVHL 524
            Y     P+    +F     HL
Sbjct: 1081 YFASPEPSEVINVFSLASGHL 1101


>Z73422-7|CAA97769.2|  603|Caenorhabditis elegans Hypothetical
           protein B0564.7 protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 541 YRLNHGKCTLHFLKSVFRVA 482
           Y  NH +C  +FLKS+F++A
Sbjct: 472 YSSNHSECDRYFLKSLFKLA 491


>U00047-12|AAA50685.1|  332|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 9 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/78 (24%), Positives = 34/78 (43%)
 Frame = -2

Query: 637 CKFFANFAVFHSNDAKIIFHDECDYFTMFTWSYRLNHGKCTLHFLKSVFRVAGAQSLIYN 458
           CK F   A    ++   I +D CD   +     +  + KC    LK   R+   Q   Y+
Sbjct: 34  CKMFFRRATLGKSEKFCINNDNCDTSNLILTCRQCRYNKC----LKMGMRIVTNQ---YD 86

Query: 457 NFENILTILPICNISKFN 404
           + ++I+ +L   N+ + N
Sbjct: 87  SLDDIIKVLAKWNLDRSN 104


>AF025457-4|AAB70966.1|  385|Caenorhabditis elegans Hypothetical
           protein C08E3.6 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 601 NDAKIIFHDECDYFTMFTWSYRLNHGKCTLHFLKSV 494
           N  + + +D   Y+    W YR N+G   LH+ +SV
Sbjct: 32  NFRRKVGNDVISYYEFEFWFYRFNNGNHDLHYDRSV 67


>Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical
           protein W06D12.2 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 359 VYYLNRIVKWKIIEG*IFYFVSILIIHFTQETIFIK*SYTIAIDINLFMLGNKSM 195
           V Y      W + E   F+F+S+  I F   T     S+T+A+   +F+LG  S+
Sbjct: 241 VAYFAYFENWTLFESVYFFFISMTTIGFGDFTP----SHTVAVGGIVFILGGLSV 291


>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 279 FHTRNYIYQVVVYHCYRYQPVYV 211
           F+TR   + V+ +HC  Y P+Y+
Sbjct: 128 FNTRTSYFLVIEHHCGIYNPIYM 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,819,357
Number of Sequences: 27780
Number of extensions: 294957
Number of successful extensions: 880
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)