Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1368
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 113 2e-26
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 113 2e-26
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 27 2.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.7
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc... 26 3.6
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 4.8
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 26 4.8
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 6.3
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 25 8.4
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 25 8.4
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 113 bits (272), Expect = 2e-26
Identities = 48/56 (85%), Positives = 51/56 (91%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVN 422
QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH +VN
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVN 116
Score = 77.4 bits (182), Expect = 1e-15
Identities = 35/62 (56%), Positives = 46/62 (74%)
Frame = +1
Query: 73 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 253 HK 258
H+
Sbjct: 60 HQ 61
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 494 RGHIIKRFPELPWL*XDKVXEINMTKXACHL 586
RGH I+ PE+P + D V TK A L
Sbjct: 140 RGHRIEEIPEVPLVVDDAVQSFQKTKEAVAL 170
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 113 bits (272), Expect = 2e-26
Identities = 48/56 (85%), Positives = 51/56 (91%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVN 422
QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH +VN
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVN 116
Score = 78.2 bits (184), Expect = 9e-16
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = +1
Query: 73 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252
++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 253 HK 258
H+
Sbjct: 60 HQ 61
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 494 RGHIIKRFPELPWL*XDKVXEINMTKXACHL 586
RGH I+ PE+P + D V TK A L
Sbjct: 140 RGHRIEEIPEVPLVVDDAVQSFQKTKEAVAL 170
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 2.1
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = +1
Query: 76 SVARPLVSVYSEKS-ETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS---K 243
SVA P S + T +A PL + ++P ND + S S +S P S
Sbjct: 381 SVASPAFPNSSTSNPSTAPASASPLA----STLKPSTANDTNGSSSSSSSNPRTSSPLAS 436
Query: 244 EAGHKPVPNHGVPDVLLP 297
A +KP P VLLP
Sbjct: 437 NAENKPPVAQQSPPVLLP 454
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 194 TSLTRSGRMGALNTNGRGLAAPCTVSLFSEYTDTKGRATDRLISATLA 51
+SLT S + + +TN A+P + SL S + A+ S++LA
Sbjct: 83 SSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLA 130
>SPCC1442.08c |cox12||cytochrome c oxidase subunit
VIb|Schizosaccharomyces pombe|chr 3|||Manual
Length = 83
Score = 26.2 bits (55), Expect = 3.6
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = -2
Query: 504 MCPLA*TSXWDASSSNGCLPRPL 436
+CP+ WD NG P P+
Sbjct: 61 LCPMEWVERWDEQRENGTFPAPI 83
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 72 SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 182
SI SP+ SVG + D + S + P+ I G + P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 147 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 242
PV +QG HT G +F Q L A +L Q
Sbjct: 29 PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 470 PVAATAACQGRSPLSEVDATVPAPP 396
PV +T Q SP+ V VPAPP
Sbjct: 395 PVQSTQYYQPSSPVQPVQNGVPAPP 419
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -2
Query: 312 GHAEFGQQHVR--YPMIRHWFV 253
G++ F +HV +P ++HWFV
Sbjct: 320 GNSTFPTRHVLSYFPQVKHWFV 341
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +1
Query: 4 DGLYHRY*CIFRRYSFAKVAEMSLSVARPLVSVYSEKSET 123
D L+H C + YSF + + + + P + Y E++ T
Sbjct: 954 DELFHY--CFYDWYSFKGLTDRLIEIDSPYIQSYLERNST 991
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,718
Number of Sequences: 5004
Number of extensions: 42423
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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