Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1368
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.3  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    21   6.9  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.2  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 72  THFSYFSEAIPP-KYTLIAVIKTIR 1
           T F YF+  +PP  +  IA++  ++
Sbjct: 110 TRFDYFARTVPPDTFQSIALVDVVK 134


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 324 YHHHGHAEFGQQHVRY 277
           +HHH H     QH+ Y
Sbjct: 351 HHHHHHQTQSLQHLHY 366


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 72  THFSYFSEAIPP-KYTLIAVIKTIR 1
           T F YF+  +PP  +  IA++  ++
Sbjct: 200 TRFDYFARTVPPDTFQSIALVDVVK 224


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 336 GQGAFGNMCRGGRMFAP 386
           G G FG++CRG     P
Sbjct: 640 GGGEFGDVCRGKLKLPP 656


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 6/16 (37%), Positives = 7/16 (43%)
 Frame = +2

Query: 275 GYRTCCCPNSACPWWW 322
           G+    C N    WWW
Sbjct: 353 GFLQPVCQNEMNKWWW 368


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 571 FGHVDLXDFVXLQPRKLGESFNNVSSSLN 485
           +G V   D   L P K+    NN+ +SLN
Sbjct: 5   WGSVIASDMAVLFPEKIIGLHNNMCTSLN 33


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = +1

Query: 196 HVSMSKNSRQPYCVSKEAGHKPV 264
           H+    ++ +P C+ +  GH P+
Sbjct: 324 HIKSPYHTPEPDCIHELLGHMPL 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,801
Number of Sequences: 438
Number of extensions: 2953
Number of successful extensions: 26
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)