Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1367
         (698 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144094-1|AAF05903.1| 3530|Homo sapiens unconventional myosin-1...    32   1.7  
BC018708-1|AAH18708.1|  434|Homo sapiens zinc finger CCCH-type c...    31   4.0  
AK027357-1|BAB55059.1|  434|Homo sapiens protein ( Homo sapiens ...    31   4.0  
L12141-1|AAA58477.1|  347|Homo sapiens fork head-related protein...    30   6.9  
AC005578-1|AAC33490.1|  598|Homo sapiens F20887_1, partial CDS p...    30   6.9  
AK128234-1|BAC87344.1|  167|Homo sapiens protein ( Homo sapiens ...    30   9.1  

>AF144094-1|AAF05903.1| 3530|Homo sapiens unconventional myosin-15
            protein.
          Length = 3530

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 270  PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNL 398
            PKP  L+P  L  +P +P++P+ +  L Q  + PET+  S  L
Sbjct: 2518 PKP--LAPAPLAKAPRLPIKPVAAPVLAQDQASPETTSPSPEL 2558


>BC018708-1|AAH18708.1|  434|Homo sapiens zinc finger CCCH-type
           containing 10 protein.
          Length = 434

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
 Frame = +3

Query: 270 PKPPELSPIYLPVSPVMPV-----QPLTSLTLTQTASGPETSP-ASDNLSV 404
           P P  ++P+ + V+PV PV     QPL  +T++ T +   T P AS ++ +
Sbjct: 379 PPPVSMAPVAVSVAPVAPVAVSMAQPLAGITMSHTTTPMVTYPIASQSMRI 429


>AK027357-1|BAB55059.1|  434|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14451 fis, clone HEMBB1001834. ).
          Length = 434

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
 Frame = +3

Query: 270 PKPPELSPIYLPVSPVMPV-----QPLTSLTLTQTASGPETSP-ASDNLSV 404
           P P  ++P+ + V+PV PV     QPL  +T++ T +   T P AS ++ +
Sbjct: 379 PPPVSMAPVAVSVAPVAPVAVSMAQPLAGITMSHTTTPMVTYPIASQSMRI 429


>L12141-1|AAA58477.1|  347|Homo sapiens fork head-related protein
           protein.
          Length = 347

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 267 WPKPPELSPIYLPVSPVMPVQPLTS-LTLTQTASG-PETSPASDNLSVP 407
           W   PE   +Y PV+PV  + PL S +TL   +S  P   PAS   S P
Sbjct: 15  WSYYPEAGEVYSPVTPVPTMAPLNSYMTLNPLSSPYPGGLPASPLPSGP 63


>AC005578-1|AAC33490.1|  598|Homo sapiens F20887_1, partial CDS
           protein.
          Length = 598

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
 Frame = -2

Query: 541 PSGFEVIDS---STPAQPRAWS--DRVSELTRVDDELIDKIQVLSHVSEEGTERLSEA 383
           P G EV+ S   S  AQ    S  ++V+ LTR + EL++K+Q+L +  ++ T+   EA
Sbjct: 217 PPGAEVLLSRQLSPSAQEHLASLQEQVAVLTRQNQELMEKVQILENFEKDETQMEVEA 274


>AK128234-1|BAC87344.1|  167|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46368 fis, clone TESTI4051504. ).
          Length = 167

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +3

Query: 252 SKHXRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASD 392
           S H R P P     + +  S V PV  +T  T   T   PE  PA D
Sbjct: 19  SFHPRLPAPRGQGSLSILCSAVSPVPSVTPSTWMATTEKPELGPAHD 65


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,540,083
Number of Sequences: 237096
Number of extensions: 2140160
Number of successful extensions: 6347
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6343
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)