Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1366
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   1.8  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   7.1  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    24   9.4  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
 Frame = -3

Query: 435 SYNIKRPVADIS---QHPNLDSEQPPELLKXAVPRXGXKLNARSTSILVRGASLGNGDSV 265
           ++N+ R V  ++   Q P++DS   PELL+   P     L   +     R A   N  S 
Sbjct: 141 AFNLLRQVLSVALKAQKPDMDS---PELLEFLKPIQSELLTITNIRDEHRTAPEFNQLST 197

Query: 264 TSNAIAVLIWVWRLTDHLTTASNGSDSS 181
             + I++L WV      L+  S   DSS
Sbjct: 198 VMSGISILGWVTVEPTPLSFMSEMKDSS 225


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 13  SSGTSSIPKFHSSLQDLKQPSLQEPR 90
           S  T+S  K H S   LK+ S  EPR
Sbjct: 255 SDETNSFSKLHQSQFGLKEESSHEPR 280


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 260 QTPSQFSFGYGG 225
           QTPS+FS  YGG
Sbjct: 62  QTPSEFSSNYGG 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,623,661
Number of Sequences: 5004
Number of extensions: 23961
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)