Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1366
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0128 - 10437407-10438049,10438097-10438272 29 1.3
06_01_0816 - 6171189-6171255,6171277-6171441,6172037-6172618,617... 29 1.7
04_03_0633 + 18208116-18208732,18209916-18210129 28 3.0
08_02_0157 - 13385589-13385675,13386187-13386357,13386572-133867... 28 4.0
06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776 28 4.0
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397... 28 4.0
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 27 5.3
06_03_1380 + 29747187-29747267,29747349-29747481,29747758-297477... 27 7.0
05_07_0005 + 26997352-26998674 27 9.2
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 186 SSSRGTEYSTTCRTARRAYSKARMACDTGGKAS 88
S S + STTCRT RA + C TG + S
Sbjct: 132 SRSTASTSSTTCRTCCRATPNSTSPCKTGSRCS 164
>06_01_0816 -
6171189-6171255,6171277-6171441,6172037-6172618,
6173451-6173761
Length = 374
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 76 GLVVLGPEDWSEISVLNWSQKIS 8
G VV GP W EI + WSQ+ S
Sbjct: 42 GRVVAGPYCWQEIDIQEWSQQQS 64
>04_03_0633 + 18208116-18208732,18209916-18210129
Length = 276
Score = 28.3 bits (60), Expect = 3.0
Identities = 22/73 (30%), Positives = 29/73 (39%)
Frame = -3
Query: 288 SLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCRTARRAYSKARMAC 109
SLG NA+A+L+W+ R G D+ R T A R S+AR
Sbjct: 25 SLGVPPPPARNAVALLMWLGR-----RGGGAGVDAVDRARRLVRTRHDAARLASEARAVL 79
Query: 108 DTGGKASWLLKAW 70
G A L + W
Sbjct: 80 HGGAAALDLARRW 92
>08_02_0157 -
13385589-13385675,13386187-13386357,13386572-13386792,
13390090-13390240,13390682-13390726,13391121-13391330
Length = 294
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 237 WVWRLTDHLTTASNGSDSSSRGT 169
WV L + +TTASN D+ SR T
Sbjct: 163 WVELLVNEMTTASNMDDAKSRAT 185
>06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776
Length = 833
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +2
Query: 218 SVSRHTQMRTAMAFEVTLSPFPSDAPLTSMDVERAL 325
SVS + R A A S FPS P T DV R L
Sbjct: 139 SVSSRRRARRAAAVTRRSSAFPSSTPPTQEDVRRGL 174
>01_01_0542 +
3975500-3975546,3976273-3976370,3976694-3976830,
3977518-3977871,3977953-3978041,3978502-3978589,
3978659-3978734,3978858-3978907,3979032-3979340,
3979803-3979982,3980086-3980325,3980471-3980582,
3980931-3981040,3981162-3981311,3981777-3981932,
3982289-3982405,3982759-3982839,3983338-3983478
Length = 844
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = -2
Query: 391 EPRQRTASRALEXRGXTTRXKAQRALYVHTXQRSVARERRQRDFKRHRSSHLGMAAH 221
E + +S+ ++ + + AQ+ + Q+ + R+Q+ +R SSHL +AH
Sbjct: 112 EAHSQQSSQQIQMQQLLLQRHAQQQQQQQSQQQPQQQRRQQKQQQRSESSHLPTSAH 168
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +1
Query: 238 NENCDGV*SHAVSVPERRSSDXYGRRARVELXSXSWXRGLQELWRLF-AVEVRMLGNVGD 414
+E C G+ H++++P + S + + L + QEL A+E VG
Sbjct: 658 HECCHGIGPHSITLPTGKRSTVRMKMQHIHLAMENNFANTQELQEFHSALEEAKADIVGL 717
Query: 415 WPLNIVTR 438
W LN + +
Sbjct: 718 WALNFLIK 725
>06_03_1380 +
29747187-29747267,29747349-29747481,29747758-29747770,
29748027-29748118,29749011-29749831,29750375-29750677
Length = 480
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 361 ELWRLFAVEVRMLGNVGDWPLNIVTRCSN 447
ELWRL + + G +G WP VT N
Sbjct: 319 ELWRLIDQQGKAPGVIGWWPAKAVTFVDN 347
>05_07_0005 + 26997352-26998674
Length = 440
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 345 PRXGXKLNARSTSILVRGASLGNG 274
P+ G +LNA S +I+++GA L +G
Sbjct: 156 PKLGVRLNAVSYNIILKGACLRDG 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,406,634
Number of Sequences: 37544
Number of extensions: 186326
Number of successful extensions: 554
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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